Protein

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Genbank accession
WCZ56888.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPSGCGDVMSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNPVTGQTQKTLPAVLRGAGFSPASFNFTTGGTLGVNDADKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLATGGISDFAWDAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFTNGETVNFGGKVLTIDCKAKFIGDGSLVFTQLGRGSVIVGVYMESVTTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPTEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGAHGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDMNPEDDRPGDFPFSQYPVHMLPLNHLIDNLFVRGSLGVGFGMDGQGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTTEQGMTIDAPNSTVSGITGFVDPSRINVANLMEEGLGNSRINSFNNGSAALRFRIHRLSKTLDSGSVYSHINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDNAVRDNGSISLYLEGDNLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72890,75070 Da
isoelectric point:5,15668
aromaticity:0,09211
hydropathy:-0,13450

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
G3DSA:2.10.10.80
ATT
65–130
G3DSA:2.10.10.80 IPR015331
IPR040775
RBD
71–131
IPR040775 IPR012332
IPR015331
RBD
138–684
IPR015331
WCZ56888.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WCZ56888.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9927
Central domain 155 594 441 0,9863
C-terminal 595 684 89 0,8528
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-594
C-terminal
595-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Kenya-K53
[NCBI] 		3027640 No lineage information
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCZ56888.1 [NCBI]
Genbank nucleotide accession
OQ291027.1 [NCBI]
CDS location
range 22886 -> 24940
strand +
CDS
ATGCCCAGCGGTTGCGGTGATGTAATGTCACTTAATGATTTACAGATAGCCAAAAAACACCAGATTTTCGAAGCCGAGGTTATCACCGGTAAACAAGGCGGTGTAGCCGGCGGTGCGGATATCGACTACGCCACTAACCCGGTAACCGGGCAGACGCAGAAAACGCTTCCCGCAGTCTTACGAGGTGCTGGTTTCTCCCCGGCATCTTTTAATTTTACGACCGGGGGTACTCTCGGTGTAAACGACGCAGATAAAGCTGTTCTTTGGCCGAAAGAAGATGGTGGAGACGGTAACTACTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTGCGACCGGCGGCATTTCGGATTTCGCTTGGGACGCGTTCGGGGATATCACCTTCCGTGCCGAAGCAGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCCGTTGATAGTGTTCTTATTGACCGCGATTACACCTTTACCAATGGTGAAACTGTTAACTTCGGAGGGAAAGTCTTAACCATTGACTGTAAAGCTAAGTTTATTGGCGACGGTAGCCTTGTTTTTACACAACTTGGTAGAGGGTCTGTTATAGTTGGTGTTTATATGGAGAGTGTCACAACGCCGTGGGTGATTAAACCGTGGACTGACGATAATCAGTGGATAACCGACCCCGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTCCCTGGTATAGAATCCCTTCTCCCTACGGAAGCTAAAGGGCAAAGCATATCTTCTACCCTGGAAATTCGGGAATGTACAGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGTGGATGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGCGGTGCACACGGCGTAATCACCTTCGAAAACTTAAGCGGAGATTGGGGCAAAGGTAACTATGTTATCGGTGGGCGCACAAGTTACGGTTCGGTAAGTAGCGCGCAATTCTTACGCAACAATGGCGGTTTCGCGCGCGATGGCGGGGTCATCGGGTTCACCTCGTATCGTGCGGGGGAAAGTGGTGTTAAGACGTGGCAAGGTACGGTAGGTTCTACGACATCTCGTAACTACAACCTGCAATTCCGGGATTCGGCGGTACTGTACCCTGTATGGGACGGCTTCGATTTAGGCGCAGATACTGACATGAACCCCGAAGATGACCGCCCAGGGGATTTCCCCTTTTCTCAGTACCCGGTACATATGCTCCCTTTAAACCATTTGATAGACAATCTATTTGTTAGAGGTTCGCTGGGGGTAGGATTCGGTATGGACGGGCAAGGTCTGTATGTCTCTAACATAACCGTCGAGGATTGCGCTGGTTCTGGGGCTTATATTCTTGCCCACGAAACAGTATTCACTAATATCGCAATAATCGATACCAATACTAAAAACTTCCCTGCGAACCAGATATATATCTCGGGGGCATGCCGTGTGAACGGTTTACGTTTGGTCGGCATCCGTTCAACTACCGAACAGGGTATGACGATAGACGCACCTAACTCTACTGTAAGCGGAATAACGGGCTTCGTGGACCCATCAAGGATTAACGTAGCCAATTTGATGGAGGAAGGTCTTGGTAACTCGCGCATAAACAGTTTCAATAATGGTTCCGCGGCGCTTCGGTTTCGCATCCATAGACTTTCAAAGACCCTTGATAGTGGGTCCGTGTACTCCCACATTAACGGTGGGCCGGGTTCTGGTTCAGCATGGACCGAAATTACCGCTATTGCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGGTGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAGGGCGATAACCTTAAAGCGTTAGTTAAGCGGGCCGACGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c08d43505d67d2e10fefd7c04e6058248ca305a220fdaddf5e42a879aaf497b0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6802
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole genome sequence of Salmonella phage Kenya-K53 Gunathilake,D., Makumi,A., Loignon,S., Trembley,D., Labrie,S., Svitek,N. and Moineau,S. 2024-01-11 — GenBank