Protein

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Genbank accession
AGN12093.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSQLNVRNLQGNSPDFRVTLDKDSTLSPQGSDIRFITQKWQRIPVGNSKNFLAHRFYPLDLFTAYTGGGGTKGFEDGIRCTLSRETGGNSDSPVGGVALKMALSGNDAYTYSYNNGTDYIVTPARNGQQWTFSVYVKGDRSLSNCMIYIFEVDDSGNYTNFHTSTFGVTTSWQRVSRSATFSNANTTGVCVRMNGPTGSSSGNLWWDGGQLELGLSVGDFVQGADTPKHDANSRETGSIQYNAQTTNLRLYKGNDFVDQAGTSNTGGAVGSFGNGGGFTVAEGARDTSHSAITGTENEILFEGLRYNDGPTGDETLSATSNTRSFLEYVSSTSSSDFAFHTGHSSPGNVSWPQYLAVKVSAYPFGQVINRVRWYKHTNAIGNVNVWGSNQDINRTNFTETGTQWTYIARLHFGGSGSGGEGSQRSQSFTNVYGYRWYMLELMDINSSALSYPSYGTRGGWAMYPVTFDNT
Physico‐chemical
properties
protein length:470 AA
molecular weight: 51174,14750 Da
isoelectric point:5,91844
aromaticity:0,12340
hydropathy:-0,53255

Domains

Domains [InterPro]
G3DSA:2.60.120.260
STR
76–211
G3DSA:2.60.120.260
DC_2119
STR
80–192
DC_2119
AGN12093.1
1 470
Architecture
STR
STR 76-211 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM3
[NCBI] 		536453 Uroviricota > Caudoviricetes > Pantevenvirales > Ronodorvirus > Ronodorvirus pssm3
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12093.1 [NCBI]
Genbank nucleotide accession
HQ337021.1 [NCBI]
CDS location
range 107736 -> 109148
strand +
CDS
ATGTCTCAATTAAACGTAAGAAATTTACAAGGCAATAGTCCTGATTTTAGGGTTACCCTTGATAAGGATTCGACCCTATCACCGCAGGGATCGGACATACGTTTTATTACACAGAAATGGCAAAGAATACCTGTAGGTAATTCAAAAAATTTTCTCGCCCATAGATTCTACCCTTTAGATTTATTTACAGCGTATACTGGTGGAGGAGGAACTAAAGGATTTGAAGATGGTATTAGATGTACATTAAGTAGAGAAACTGGTGGTAATTCAGATTCACCTGTAGGTGGTGTAGCACTGAAGATGGCATTATCTGGTAATGATGCCTATACCTATTCATATAATAATGGTACTGATTATATTGTAACACCTGCTAGAAATGGACAGCAATGGACATTTAGTGTATATGTCAAGGGAGATAGATCCTTGAGTAATTGTATGATATACATTTTTGAGGTAGATGACTCAGGTAATTATACTAATTTTCATACATCCACTTTTGGTGTAACAACATCATGGCAGAGAGTTTCAAGAAGTGCTACATTTAGTAATGCTAACACAACAGGTGTATGTGTTAGGATGAACGGACCTACTGGTTCTAGCAGTGGAAATTTATGGTGGGATGGCGGACAATTAGAATTAGGATTATCAGTTGGTGATTTTGTTCAAGGTGCTGATACACCAAAGCATGATGCAAATTCAAGAGAGACAGGAAGCATACAATATAATGCTCAGACTACAAATCTAAGATTATATAAAGGTAATGATTTTGTAGATCAAGCAGGAACATCAAACACAGGAGGAGCAGTAGGTTCATTTGGTAATGGTGGAGGATTTACAGTAGCAGAAGGAGCAAGAGATACATCACATAGTGCAATAACAGGAACAGAGAATGAAATATTATTTGAAGGACTTAGATATAATGATGGTCCTACTGGTGATGAAACTTTAAGTGCAACATCTAATACACGTTCATTCTTAGAGTATGTTTCATCAACAAGCAGTAGCGATTTTGCATTTCATACAGGACATAGTAGTCCAGGTAATGTCTCTTGGCCACAGTATCTTGCAGTTAAAGTTTCTGCATATCCTTTCGGACAAGTAATCAATAGAGTTAGATGGTATAAACATACAAATGCTATTGGTAATGTAAATGTCTGGGGATCTAATCAAGATATAAACCGCACCAACTTCACGGAAACAGGAACACAATGGACATATATTGCAAGACTTCACTTTGGTGGATCAGGTTCTGGTGGTGAGGGATCACAGAGATCACAAAGTTTTACCAACGTGTATGGGTATCGTTGGTATATGCTAGAATTGATGGACATTAATTCATCTGCACTATCATATCCCTCTTACGGAACTAGAGGTGGTTGGGCAATGTATCCTGTAACATTCGATAATACATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
12961e9f99d2936a137a2af1003e4a110e786f057792c3350cb5322cd76df4cf
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7736
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank