Protein

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Genbank accession
YP_009003198.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MTAADLWTYGGGSISPQYSGLSNTGNFYLEANGAQTGKYQLVLDRKSTSYGTNLNATLANKFPVTQGQTLTVETSFCTKGSATTAGFYLTVYFYDQDGVQTSSSFLWNNTAIPAAYATATKKIVVPAGSVYCAIRLTHGVGSNSQYLYVDRVAVRYANAATLLIDGSVKANHIQVDDLAALQITVKNIDIETGTIGGEKLTNGAISDVYVDSSGSSIYLNGSSNILVRNIAVKATERLIFNATWNIRSFIDFDTEICWYGYAQLVVNSTVIAQTMIVGPAIDGYTCSNQSMAGAAIIGSDQTVTCYFRFVIGSGGTPRAGSYNGGALSQNPMSNDGVYWTILRAKK
Physico‐chemical
properties
protein length:346 AA
molecular weight: 36925,97640 Da
isoelectric point:6,71066
aromaticity:0,10694
hydropathy:0,02572

Domains

Domains [InterPro]
G3DSA:2.60.120.260
STR
2–155
G3DSA:2.60.120.260 DC_1507
DC_1214
STR
2–164
DC_1214
YP_009003198.1
1 346
Architecture
STR
RBD
STR 2-164 | RBD 165-346
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009003198.1
1 346
Domain Start End Length (AA) Confidence
N-terminal 1 19 19 0,0035
Central domain 20 218 200 0,1245
C-terminal 219 346 127 0,9987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-19
Central
20-218
C-terminal
219-346

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage vB_RleS_L338C
[NCBI] 		1414737 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009003198.1 [NCBI]
Genbank nucleotide accession
NC_023502.1 [NCBI]
CDS location
range 35496 -> 36536
strand +
CDS
TTGACGGCGGCTGACCTGTGGACCTATGGCGGCGGTTCGATCAGCCCGCAGTATTCCGGCTTGTCGAACACGGGCAACTTCTATCTGGAAGCCAACGGTGCGCAGACCGGCAAGTACCAGTTGGTTCTTGACCGCAAGAGCACGTCCTACGGCACCAACCTGAATGCCACCCTGGCAAACAAGTTCCCTGTCACCCAGGGCCAGACCCTGACCGTGGAAACGTCCTTCTGCACCAAGGGCAGCGCCACGACGGCGGGCTTCTATCTGACGGTGTACTTCTACGACCAGGACGGCGTCCAGACTAGCTCGTCGTTCCTCTGGAACAACACGGCCATCCCGGCGGCTTATGCCACGGCGACCAAGAAGATCGTTGTCCCGGCGGGCTCGGTTTACTGCGCTATCCGTCTGACCCATGGCGTGGGCTCGAACTCACAGTACCTGTATGTGGACCGCGTTGCTGTCCGCTATGCGAATGCCGCCACGCTGCTGATCGACGGTAGCGTCAAGGCCAACCATATCCAGGTTGACGACCTTGCCGCCTTGCAGATCACGGTCAAGAACATCGACATCGAGACCGGCACGATTGGCGGCGAGAAGCTGACCAACGGCGCAATCTCGGATGTCTACGTCGATAGCTCTGGATCGTCCATTTACCTTAACGGCTCCTCGAACATCCTCGTTCGTAACATCGCCGTGAAGGCAACAGAGCGCTTGATCTTCAATGCCACCTGGAACATCCGAAGCTTCATCGACTTTGACACGGAAATCTGCTGGTATGGTTATGCCCAGCTAGTCGTCAACAGCACGGTTATTGCGCAGACTATGATTGTCGGGCCTGCCATTGACGGCTATACGTGTAGCAACCAGTCCATGGCTGGCGCGGCTATTATCGGTTCTGACCAGACTGTCACCTGCTACTTCCGCTTCGTCATCGGTTCCGGCGGCACACCTCGTGCAGGCAGCTACAACGGCGGAGCGCTGTCGCAGAACCCGATGTCTAATGACGGCGTCTACTGGACCATTCTGAGGGCAAAGAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0a9f2933b081030a6a46bf86d8049065c8b0545e5d7a4838df3d911dd1e0dc08
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6924
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of Rhizobium leguminosarum phages from western Canadian soils and complete genome sequence of rhizobiophage vB_RleS-L338C Restrepo-Cordoba,M., Halmillawewa,A.P., Hynes,M.F. and Yost,C.K. 2015-09-16 — GenBank