Protein

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Genbank accession
APC46581.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALVPHKFTALAESDAEGTDGKNIIAGAVVSLYDPDGNAATLFDDENYGNGSTAKQTDAKGQVVVYVEQGEYDEEVNGSIRRRVLIGSKSNDIISYGTTAEIEALRPNQTGSRIENRERANAQYVLREEGYVAQAGDITAANGRVWALKVSNIICSEWFGGGFDAIQNAANIASIIGAKVYTSTDVDFAGATLSIPSGVKVIGVSKPSWTNAKVSASGATGAPVSFTGAAIKGDKQITLSSASGLSEGGWLKVISATNSNSQDAGDLQLGDRTSNNSQLSEFVQVQSISGSVVTLHEPLLWNYPITASTDTPSGISTSFAVPVDFHSNGLLEGVKISGNFADYLFEASFAKDFILKDCYIDAANAGAVQWLYCYNSGAKGGTYRNTQWGVDTNAQTIPFKFLSCQECYINGKAEVVGGQQGIDITYEVGDTTYYGGPSISCRVENNVTKAQPTDGITSHPGCYNTMILNNVVYAEGNGIRIRSRADVVRGNTCYGSSTSINGILADSLFLEGSVIEGNTLINFISGITQADNSDPLVADNANQVIVKGNTTIGCGYGFSCNFSNPTSLLTNTVVQGNLWVGNSERNLIRGVTLGKYSNGLTIKDNTSINATEAGVRYSANIINLTIKDNECLNLAPAGYGVRGASSSSFITDLTTFPDGESSANLSIRNNSQMGGIDYTGIVRNGDCYRLPSPTGYQGFSVPISDRGLPALQLQTMNLYLDNSTSPPELRAKVNNGTSVFDVLITQLT
Physico‐chemical
properties
protein length:748 AA
molecular weight: 79141,78190 Da
isoelectric point:4,71681
aromaticity:0,08021
hydropathy:-0,16163

Domains

Domains [InterPro]
IPR012334
STR
163–587
IPR012334 IPR006626 IPR006626
IPR011050
STR
163–558
IPR011050
IPR006626
Unmapped
438–460
IPR006626 IPR006626 IPR006626
APC46581.1
1 748
Architecture
STR
STR 163-587 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APC46581.1
1 748
Domain Start End Length (AA) Confidence
N-terminal 1 162 162 0,9937
Central domain 163 678 517 0,9830
C-terminal 679 748 69 0,9422
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-162
Central
163-678
C-terminal
679-748

Taxonomy

  Name Taxonomy ID Lineage
Phage Alteromonas phage PB15
[NCBI] 		1913113 No lineage information
Host Alteromonas gracilis
[NCBI] 		1479524 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APC46581.1 [NCBI]
Genbank nucleotide accession
KX982260.1 [NCBI]
CDS location
range 31907 -> 34153
strand -
CDS
ATGGCATTAGTACCACATAAATTTACAGCGTTAGCAGAGTCTGACGCCGAAGGAACAGACGGCAAAAACATAATAGCTGGCGCGGTGGTGTCCTTATACGACCCTGACGGCAATGCAGCTACATTGTTTGATGATGAAAATTACGGCAACGGTAGCACGGCAAAGCAAACTGACGCGAAAGGGCAAGTTGTTGTATACGTCGAGCAGGGCGAGTATGACGAAGAGGTTAACGGCTCAATTAGGCGTAGGGTGTTAATTGGTTCGAAAAGTAACGATATCATTAGTTACGGCACAACGGCTGAGATTGAGGCGCTGCGACCAAACCAGACAGGTTCGCGCATTGAAAACCGTGAAAGAGCTAATGCTCAATACGTGCTACGTGAAGAGGGCTATGTTGCACAGGCTGGGGATATTACGGCAGCTAATGGGCGTGTTTGGGCTTTAAAAGTTAGCAATATAATTTGCTCTGAGTGGTTTGGTGGGGGGTTTGATGCTATCCAAAATGCTGCAAATATAGCGTCGATTATAGGAGCGAAAGTATACACATCGACAGACGTTGATTTTGCAGGCGCAACCCTTAGCATCCCCAGCGGGGTTAAGGTTATAGGTGTGAGTAAGCCGAGTTGGACGAACGCTAAAGTTTCGGCTAGCGGTGCAACAGGTGCGCCAGTCAGCTTTACTGGAGCAGCTATTAAGGGCGATAAACAAATTACCCTGAGTAGTGCTTCTGGACTGTCTGAGGGGGGTTGGCTAAAAGTTATCAGCGCTACAAACTCTAACAGCCAAGATGCAGGCGATTTACAATTAGGGGATAGAACCTCTAACAATTCGCAGTTGTCTGAGTTTGTGCAAGTGCAGAGCATATCTGGGAGTGTAGTCACTCTACACGAACCATTGTTATGGAACTACCCAATTACAGCTAGCACAGACACTCCTTCGGGAATATCCACTTCATTTGCTGTACCGGTAGACTTCCACAGTAACGGCTTGTTGGAGGGGGTTAAAATTAGCGGAAATTTCGCCGATTACCTTTTCGAAGCGTCTTTTGCTAAAGACTTTATTTTAAAAGATTGCTACATTGATGCAGCAAATGCTGGCGCTGTGCAGTGGTTGTATTGCTACAACTCAGGCGCTAAGGGCGGAACTTACAGAAACACCCAATGGGGTGTGGACACCAACGCGCAGACAATACCTTTTAAATTTCTCTCTTGCCAAGAATGCTATATTAATGGAAAGGCGGAAGTTGTTGGCGGTCAGCAGGGAATTGACATTACGTATGAAGTTGGCGACACCACATACTACGGCGGGCCATCTATATCATGTCGCGTAGAGAATAACGTGACTAAGGCGCAACCCACAGATGGCATAACGTCGCATCCAGGTTGTTACAACACAATGATACTGAACAATGTGGTTTATGCTGAAGGTAATGGAATACGTATACGCTCAAGAGCTGACGTTGTTAGAGGAAATACGTGCTACGGTTCGTCTACTTCAATTAATGGTATCCTTGCAGATTCCCTCTTCTTGGAAGGCTCTGTAATTGAGGGCAATACATTAATTAACTTTATCTCTGGTATAACGCAGGCAGACAATTCAGACCCCCTTGTGGCGGATAATGCCAATCAGGTTATAGTTAAAGGTAATACAACAATAGGCTGCGGTTATGGATTCAGTTGTAATTTTTCTAACCCAACATCATTACTAACAAATACCGTGGTTCAGGGAAATTTATGGGTAGGAAACAGTGAGAGAAATCTTATTCGCGGTGTCACATTAGGCAAATATTCTAATGGTTTAACCATAAAAGATAATACAAGCATAAACGCAACTGAAGCAGGTGTAAGATACTCTGCTAATATTATAAATCTCACAATTAAAGATAATGAGTGTTTAAATTTAGCTCCTGCTGGATACGGTGTTCGTGGTGCAAGCTCTTCTTCGTTTATAACGGATTTAACAACGTTTCCTGATGGAGAGTCTTCTGCCAACCTGTCAATTAGAAATAATTCACAAATGGGCGGGATAGATTACACAGGCATTGTTAGAAACGGGGATTGTTACAGATTGCCATCTCCAACAGGATATCAGGGCTTTTCCGTTCCCATATCCGATAGAGGGTTGCCCGCACTTCAACTACAGACGATGAATCTTTATTTAGACAATTCTACTTCGCCACCAGAGCTAAGGGCTAAGGTAAATAACGGGACGTCCGTTTTTGATGTATTAATCACACAGTTAACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7a16a36d6e135102b32cf5101b4d408bc7c385d9e33a2d640209fdce5bdfabd5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8012
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Pseudoalteromonas Phage PB15 from the Yellow Sea of China Gao,Y. 2017-04-20 — GenBank