Protein

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Genbank accession
YP_009021396.1 [GenBank]
Protein name
haemolysin-type calcium binding
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MANKPTQPLFPLGLETSESSNIKGFNNSGTIEHSPGAVMTFPEDTEVAGLPSSVRYNPDSDEFEGYYENGGWLSLGGGGIRWETLPHAPSSNLLEGRGYLINNTTGASTVVLPPPTRVGDSVTICDAYGKFATYPLTVSPAGNNLYGSTEDMTISTDNVSATFTWSGPEQGWVVTSGVGLGQGRVYSREIFTQILASETSAVTLNTPPTIVDVYADGKRLAESKYSLDGNVITFSPSLPASTELQVIEYTPIQLGNGGGSSSSTITWVYNGGSAIGGETEITLDIVVDDVPAIDINGSRQYKNLGFTFDPLTSKITLAQELDAEDEVVVIINGTPNIYNQIDYTLREVARVTNVKDTEVVYFSVGAVLSGYKVIYDKVTQRSYFIPELPTGTTAVSLSSSAVLVHSAGSVDLGALAVSREEYVTLSGTFDSGAVINVKNELLTHTNGKYRWDGTLPKTVDAGSTPETTGGVDLGAWVSVGDASLRNDLKSDDVQLGDNLITVKQPFSSASTRTQHNKNSEFVSLMDFVDPNTVTTDYTIAIFNAISDGVTGLIIPPGKYVVSNLEIGIPLQFLPGSSLSVTAGSTLTIRGQIFAPDVRIFYGDGTVNIQGPARKNKSGAYWFGLHGNDVRVTATCAIGNPVISAPGHFFQEGDGVAIEHVGSAAALPIPTNVTVAATGLNRQGPTGTTTYSYRVATVDENGAVSVASAPITITNGNDTLGKLTPSIRGLAFNVIRWDSSIGSAAVWRSKAGGAYELLGVFGMGQSDSIANGLMDSGLPAITIPWIPPQPTEAALPPRIITKVVSVTTNTVTVKNAPQVTGAALIRNDASVDLVSYMNNCDEAFIPSGVHNVTSCTVPTTVKRIFGNGYQSLIYGWGNLNSVLNCTGMGAGFSIEGIRVHSTAWHNQIGIQLNQLTKAKVKDCYTSGNLPIFLNGCTRTVVSDVLVEEWIDSAIFDYMGNWNTIKDIDVEQGCAAIPQNAAAIHLYGTSTGIVRDIRTSGFHVYGVKIESGNQNWAYQNYISNSWVESLHITGSSSGNRLTNNSMFGSTHCMDYAISISNDDRPNCVMHANEVAYNFIYECGTSAIAVCEFGGANPDINYTVVKGNTVFGANKNGIANTPEIYIEGAHVRNTYIGDHHSFSSGAVNYMVQEVNDLYGLPNNTQVGTLFGDTPTTGLVMLTGTGSAKLAGGGTGL
Physico‐chemical
properties
protein length:1193 AA
molecular weight: 126406,58740 Da
isoelectric point:4,77899
aromaticity:0,08298
hydropathy:-0,05356

Domains

Domains [InterPro]
DC_1946
ATT
1–1192
DC_1946
G3DSA:3.30.2020.50
ATT
335–420
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR012334 IPR011050
IPR040775
RBD
416–481
IPR040775
YP_009021396.1
1 1193
Architecture
ATT
ATT 1-1192 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009021396.1
1 1193
Domain Start End Length (AA) Confidence
N-terminal 1 538 538 0,9965
Central domain 539 1171 634 0,8338
C-terminal 1172 1193 21 0,8658
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-538
Central
539-1171
C-terminal
1172-1193

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB-SalM-SJ2
[NCBI] 		1458849 Uroviricota > Caudoviricetes > Pantevenvirales > Cvivirinae > Kuttervirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009021396.1 [NCBI]
Genbank nucleotide accession
NC_023856 [NCBI]
CDS location
range 105011 -> 108592
strand +
CDS
ATGGCCAACAAACCAACACAGCCTCTTTTCCCTTTGGGTTTAGAAACTTCTGAGTCTTCGAACATAAAAGGCTTCAACAACTCCGGCACTATTGAGCATTCCCCTGGTGCCGTAATGACATTCCCTGAAGATACTGAAGTTGCAGGTCTTCCATCTTCTGTACGTTACAATCCTGATAGCGATGAATTTGAAGGTTATTACGAAAACGGTGGTTGGTTGTCTTTGGGGGGCGGTGGAATACGCTGGGAAACGCTCCCTCACGCTCCCTCTAGCAATTTGTTAGAAGGTCGCGGCTATCTCATTAATAACACCACAGGGGCATCTACAGTGGTTCTCCCTCCCCCTACACGTGTTGGGGATTCCGTTACTATTTGTGATGCTTATGGAAAATTCGCCACTTACCCATTGACTGTATCTCCAGCGGGAAATAACCTTTACGGCTCCACCGAAGATATGACGATATCCACCGATAACGTGTCGGCGACTTTCACTTGGTCTGGGCCTGAACAAGGTTGGGTTGTCACATCCGGCGTCGGCCTTGGCCAAGGCCGTGTCTACAGTCGTGAGATTTTTACACAAATTTTGGCGTCTGAAACAAGCGCTGTCACTCTCAATACTCCACCAACAATCGTGGACGTGTATGCTGACGGAAAACGTCTTGCGGAATCCAAATATTCACTAGATGGGAATGTGATCACTTTCAGTCCTTCTTTGCCAGCCAGCACAGAACTTCAGGTGATTGAATATACTCCTATTCAATTGGGTAATGGCGGTGGTTCTAGTTCTTCTACGATTACCTGGGTCTATAATGGGGGTTCTGCGATTGGTGGTGAAACCGAAATCACGTTAGACATCGTTGTCGATGATGTTCCGGCCATTGATATAAACGGAAGTCGCCAGTATAAAAATCTGGGGTTCACATTTGATCCATTAACCAGTAAAATCACTCTTGCGCAAGAACTGGATGCAGAGGATGAAGTTGTTGTAATTATCAATGGAACGCCAAACATCTATAATCAAATTGATTATACTTTGCGGGAAGTGGCTCGTGTAACCAATGTTAAAGATACAGAGGTTGTTTATTTTAGTGTTGGTGCGGTGTTAAGCGGGTATAAAGTTATCTATGATAAAGTAACACAGAGATCATATTTTATTCCAGAGCTACCGACTGGAACCACGGCAGTCAGCCTTAGTTCTTCGGCTGTACTTGTGCATTCTGCTGGTAGTGTTGATCTGGGCGCATTAGCTGTATCTCGTGAAGAATATGTTACCTTGTCTGGGACATTTGATTCTGGTGCTGTTATCAATGTTAAAAATGAATTACTCACCCATACGAACGGTAAGTATCGTTGGGATGGTACACTTCCTAAAACTGTCGATGCTGGCTCAACACCTGAGACAACTGGCGGCGTTGATTTAGGTGCATGGGTTAGTGTTGGTGATGCTTCTCTACGTAATGATTTAAAATCTGATGATGTACAGTTAGGTGATAACTTAATTACAGTAAAGCAACCATTCTCTTCAGCATCTACCAGAACCCAACACAATAAGAACTCAGAGTTCGTCAGTCTGATGGATTTTGTCGACCCTAATACCGTCACTACGGATTACACGATTGCTATTTTTAATGCTATATCTGATGGTGTGACTGGTCTGATAATTCCTCCAGGAAAATATGTAGTCAGTAATCTTGAGATTGGTATCCCATTACAATTTCTTCCAGGTAGTTCGTTGTCTGTCACAGCAGGGTCAACCTTAACAATCAGGGGACAAATTTTTGCTCCTGATGTTAGAATTTTTTATGGTGATGGTACTGTTAATATTCAGGGGCCAGCCAGAAAAAATAAATCAGGTGCTTACTGGTTTGGGCTACATGGAAATGATGTACGTGTAACTGCAACATGTGCAATTGGTAATCCGGTAATATCTGCCCCAGGTCATTTCTTCCAGGAAGGGGATGGTGTAGCTATAGAACATGTTGGGTCTGCTGCTGCATTACCCATCCCTACAAATGTCACTGTAGCGGCAACAGGACTTAATAGACAAGGGCCAACAGGAACCACAACATACAGCTATCGCGTTGCTACCGTTGATGAGAATGGTGCTGTAAGTGTAGCTAGTGCACCAATTACCATTACTAATGGTAATGACACTCTTGGTAAATTGACACCAAGCATACGTGGTTTAGCTTTTAACGTTATTCGTTGGGATAGTTCTATAGGAAGTGCTGCTGTATGGCGCAGTAAAGCTGGTGGTGCATATGAACTATTGGGTGTATTTGGTATGGGTCAATCTGACTCTATAGCTAATGGCCTAATGGATTCTGGATTGCCTGCTATCACTATACCGTGGATTCCACCACAACCTACGGAAGCGGCATTACCTCCACGTATTATTACTAAAGTTGTTTCTGTAACTACTAATACGGTTACTGTGAAGAATGCACCACAAGTAACTGGTGCTGCATTGATACGTAATGATGCGTCAGTAGACTTGGTTAGTTACATGAATAATTGTGATGAGGCATTTATCCCCTCTGGTGTGCATAACGTAACAAGCTGCACTGTTCCTACCACAGTTAAACGAATTTTTGGTAATGGATACCAGTCTCTTATATATGGTTGGGGTAACTTAAATAGCGTACTTAATTGTACTGGGATGGGGGCTGGATTCTCGATTGAAGGTATTCGTGTGCACAGTACAGCTTGGCATAACCAGATTGGCATTCAATTGAACCAGCTTACCAAGGCAAAGGTCAAAGATTGTTATACGTCTGGTAACTTGCCCATATTCCTCAATGGTTGTACCCGCACAGTTGTATCCGATGTGCTTGTTGAAGAGTGGATTGATTCCGCAATTTTCGACTACATGGGTAACTGGAATACCATCAAAGATATTGACGTGGAACAAGGCTGTGCAGCTATCCCACAAAACGCTGCTGCTATTCACTTGTATGGTACAAGTACTGGCATTGTTAGGGATATTCGCACATCTGGTTTCCATGTGTATGGGGTTAAGATAGAAAGTGGTAATCAGAACTGGGCATATCAGAACTACATCAGTAACTCTTGGGTAGAATCTCTTCACATTACTGGTAGTTCTTCTGGCAACAGGCTTACCAATAACTCAATGTTCGGTAGCACTCATTGTATGGACTATGCTATTAGCATTAGCAACGATGACCGACCAAACTGCGTTATGCACGCGAATGAGGTTGCTTACAACTTCATTTATGAATGCGGTACTAGTGCAATAGCTGTTTGTGAATTTGGAGGTGCTAACCCAGATATAAATTACACGGTAGTTAAGGGTAATACCGTATTTGGTGCTAATAAGAATGGTATTGCAAACACACCAGAAATTTATATTGAAGGTGCCCATGTACGTAATACATACATAGGGGACCACCATTCATTCTCTTCTGGTGCTGTGAATTATATGGTGCAGGAAGTTAATGACCTTTACGGATTACCCAACAACACACAAGTTGGTACTCTTTTTGGCGATACACCAACAACAGGCCTCGTTATGTTGACTGGTACTGGCAGTGCTAAACTAGCAGGCGGAGGAACTGGCTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ee8ff831a0a4a5e8015f7d5dbec3b3e44e81433743181c6913f8c221fbcfd19a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6795
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of two Salmonella enterica Typhimurium phages effective in limiting Salmonella in swine Zhang,J., Hong,Y., Harman,N.J., Singh,A. and Ebner,P.D. 2022-06-16 — GenBank