Protein

View in Explore
Genbank accession
QZI86276.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MTTKVNNRMIDTDVANMTDYGAVEGGDLSPILNYMLAQGLKHINVDVESGTFGSKIDDMENVTLSGLGMGRTLLTRTFDGLLFDLGNYCELRNMQITGGVALIAKVLTGTAGLFIDRCRLIPDGGYAAVAMESDTVSTYFANSIFGSGDTRVGGLAMVTGATDGNGVRHITDCSGAGNPLADLTGMDDVFITGGFSTNGLIFDDTTSKIFINNMRWGVSTSNPITRLEIRGENISIDNEVGLPLDLYCSSSQISTVTPGGYDINDYGSGNMVEVRARAYTPVLTGSGGITPSLGSGSLNGIYSRAGNKITVNLELIWAADSVLGNGQFIFSLPDSMPVVQNLGLQQYSGTGIVRSSTNLLVNARFNNNTRTFTLEGVDNSGNRVDVGVSTPLSAGDRIWFQGEYWA
Physico‐chemical
properties
protein length:406 AA
molecular weight: 43049,78020 Da
isoelectric point:4,46490
aromaticity:0,07635
hydropathy:-0,00394

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QZI86276.1
1 406
Domain Start End Length (AA) Confidence
N-terminal 1 28 28 0,9548
Central domain 29 227 200 0,9377
C-terminal 228 406 178 0,9665
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-28
Central
29-227
C-terminal
228-406

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PS32B.2
[NCBI] 		2859295 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio crassostreae
[NCBI] 		246167 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QZI86276.1 [NCBI]
Genbank nucleotide accession
MW865297.1 [NCBI]
CDS location
range 32372 -> 33592
strand -
CDS
ATGACTACTAAAGTTAATAATCGAATGATTGACACTGACGTCGCTAATATGACAGATTACGGCGCAGTTGAAGGAGGAGATCTTTCCCCTATCCTCAACTATATGTTGGCTCAAGGTTTAAAACATATCAATGTCGACGTTGAGTCAGGAACGTTCGGGTCAAAGATTGACGATATGGAGAACGTAACCCTTAGCGGTTTAGGTATGGGACGTACTCTCTTAACCCGAACGTTCGACGGTTTGCTGTTCGATCTCGGCAATTATTGTGAACTACGTAACATGCAAATCACTGGAGGTGTAGCCCTCATAGCTAAAGTTCTTACAGGAACCGCTGGCCTATTCATAGACCGTTGCCGTTTAATTCCAGACGGAGGCTATGCGGCTGTGGCTATGGAAAGTGACACGGTGTCAACTTACTTTGCTAACTCCATCTTTGGTTCTGGGGATACTCGTGTCGGGGGCCTAGCAATGGTAACAGGGGCTACCGACGGCAATGGTGTTCGGCATATTACTGACTGCTCAGGTGCAGGGAACCCCCTCGCAGACCTCACAGGAATGGATGATGTGTTTATCACAGGAGGCTTTTCAACTAATGGTTTGATCTTTGATGATACAACATCTAAGATCTTCATTAATAATATGAGATGGGGTGTCTCTACTTCCAACCCTATCACACGTCTTGAAATCCGAGGGGAGAACATTTCAATTGATAATGAAGTGGGACTCCCTTTAGACCTCTATTGCTCTTCAAGTCAGATTAGTACAGTTACTCCCGGAGGTTATGATATCAATGACTACGGGTCGGGCAACATGGTAGAGGTTCGCGCTAGGGCATATACTCCTGTCTTAACAGGCTCTGGTGGGATAACTCCTTCTCTTGGAAGCGGCTCTCTTAATGGCATATACAGCCGTGCAGGGAACAAGATCACTGTCAATCTTGAGTTAATTTGGGCAGCTGACAGTGTGTTAGGGAATGGTCAGTTCATTTTTAGCTTGCCTGATAGCATGCCGGTTGTTCAAAACTTAGGTCTCCAGCAATACAGCGGTACAGGTATCGTTCGCAGCAGTACAAACCTCTTAGTTAACGCACGTTTCAATAACAATACACGAACTTTCACTTTAGAAGGTGTCGATAATTCCGGTAATCGTGTGGATGTAGGGGTAAGCACTCCCTTGTCAGCAGGAGATCGAATATGGTTCCAAGGCGAGTATTGGGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
452a7bf885f0fcd9b11c62accf46006aabfb534c15d5d8fe8cc0ad21f26bc4d5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7809
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Rapid evolution of virus immunity in the wild Piel,D., Bruto,M., Labreuche,Y., Blanquart,F., Chenivesse,S., Lepanse,S., James,A., Garcia Cruz,R., Dubert,J., Petton,B., Lieberman,E., Wegner,M.K., Hussain,F.A., Kauffman,K.K., Polz,M.F., Gandon,S., Bikard,D. and Le Roux,F. 2024-02-09 — GenBank