Protein

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Genbank accession
QOC54631.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAVVFDPHQKLPGNKITGEPGTVIGTKYRMLVPKNGPFYTGSLVVKSAGKVLKLASDYVITHPYMTSMQRTGRSTHGMIWIINPNYTQNFTLDYHAVGIGVGSTAQVNAERDRNKDVFPSECQWEMVIGDVYFPPVDIQFDWENWKGERELMTAIAAIGKKLAQVPTDSDGSDVLTILKKYHELVDKLYRTSPAIAHVTDKNNPHGDDSYGRMRAIETNGIADDATLVYGRTQAQLATYVNGLSAKATDFTDKMLRTGADRTITGTFTMLPGLSSVTSSKDAESNGVGTNLQVDDKAVRALARDNIRVSAGNQPITFTAGANSFVLYPDSRGLRWNNKILLDPTTVGQYLPGNSGGGDGIYYGANTATVSITGNGIETQPFILTFLPPSDADVNSLAMRLLTSEFGDSQTLAATPALIKKLAQTFTGKLEKARAYINGVSLASSVTIDKYTLNLGSVENISDDALPVSTAQATEFAKYAQVGHTHDAAAFGIGSATTAKAGLIRYGGLVNDATLALDGSYVLQQLKDVAKLETVQDNSDPNAVIDILRYGDSGNGAIQAAVTITGWMVSIKANNYFVGRDYTVPLTTFNVAELFPASHEDATFGIFVDIVDNAAVYVIKDSTNLAESETMTRIGDILTDEDSVISASVRNVTRLGDYRELADHAANVSAHTPRAITQAAFGYAYGKEGVSWAGGSGSVNTVGSDWREFAIDGLTALAAGYPIDGGFQVTTTYRAGWVNLTPISNVDGVGVNFTPDGPTVSGDGLLHLLAYKKGAAFRTLSLAVTTSGVNSPAGNRVNLALCGNWGASSPIPSFTLGIDESRYAIASSFDRLNPRLTYGLNRGPSIVITGTVKLLNYTIKYTLTLSTVASTMAIERVETGEKSTTDITSRLAAADIDVAMLLSTPEKPIYFGVGAALNKTVKIMVSYTDGQFNAQHRYATALDYLNNYSELGRVRVYEGVAGNSQAIDLKKSVIANSIAAAKWGEGLPSAINYVGMDLQLVGSNYKAIVFRD
Physico‐chemical
properties
protein length:1011 AA
molecular weight: 108092,32020 Da
isoelectric point:5,59184
aromaticity:0,08408
hydropathy:-0,09288

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOC54631.1
1 1011
Domain Start End Length (AA) Confidence
N-terminal 1 696 696 0,9172
Central domain 697 908 213 0,6714
C-terminal 909 1011 102 0,6933
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-696
Central
697-908
C-terminal
909-1011

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage pSal-SNUABM-04
[NCBI] 		2759192 No lineage information
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOC54631.1 [NCBI]
Genbank nucleotide accession
MT710307 [NCBI]
CDS location
range 150773 -> 153808
strand -
CDS
ATGGCTGTCGTCTTTGACCCGCATCAAAAATTACCGGGTAATAAAATTACCGGTGAGCCGGGAACCGTCATTGGTACGAAGTACCGCATGCTGGTCCCGAAGAATGGCCCTTTTTACACCGGTTCATTGGTCGTCAAAAGTGCTGGTAAAGTTTTAAAGCTGGCCTCGGACTACGTCATCACCCATCCGTACATGACCTCTATGCAACGGACAGGGCGTTCCACCCACGGCATGATTTGGATAATCAACCCAAATTACACGCAGAACTTCACACTGGATTACCACGCGGTAGGTATCGGTGTCGGTAGCACTGCACAGGTGAATGCCGAACGTGACCGGAATAAAGATGTGTTCCCGTCCGAGTGTCAGTGGGAGATGGTCATTGGGGATGTGTATTTCCCGCCAGTGGATATCCAGTTCGATTGGGAAAACTGGAAAGGTGAGCGTGAGCTGATGACCGCCATTGCGGCCATCGGTAAGAAACTTGCCCAAGTTCCCACAGACTCCGACGGCAGTGATGTCTTAACCATCCTCAAAAAGTACCACGAGTTGGTCGACAAACTGTATCGCACTTCTCCGGCTATTGCACACGTCACCGATAAGAACAATCCGCACGGAGACGATTCCTACGGGCGTATGCGGGCGATTGAGACCAACGGTATTGCTGATGACGCAACACTCGTCTACGGCCGTACACAGGCGCAATTAGCCACGTATGTGAATGGCCTCAGTGCGAAAGCCACAGACTTCACAGACAAGATGTTACGTACCGGTGCTGACCGGACGATTACCGGTACCTTTACCATGTTGCCGGGCCTGTCATCTGTAACCTCATCAAAAGACGCTGAGTCAAACGGTGTGGGAACGAATTTGCAGGTTGACGATAAAGCGGTGCGGGCGTTAGCGCGTGACAACATCCGTGTGTCTGCCGGTAACCAACCGATTACGTTTACTGCCGGGGCGAATTCGTTTGTGCTCTACCCCGACTCGCGTGGTCTGCGGTGGAACAACAAAATCTTACTCGACCCGACGACGGTTGGTCAGTACCTGCCGGGGAACAGTGGCGGTGGCGACGGTATCTATTACGGTGCCAATACCGCAACGGTTAGCATTACCGGTAACGGGATTGAAACCCAACCGTTTATCCTGACCTTCCTTCCGCCGTCTGATGCCGATGTGAACTCGCTGGCCATGCGTCTACTCACCAGTGAGTTTGGTGACTCGCAAACGTTAGCGGCGACCCCGGCTTTGATTAAGAAGCTGGCGCAAACCTTCACCGGGAAACTGGAGAAGGCCCGTGCGTACATCAACGGGGTATCTTTGGCATCGTCCGTGACCATCGATAAGTACACGTTGAATCTGGGTAGCGTGGAAAACATCAGCGATGATGCTCTGCCGGTCTCAACCGCACAGGCTACCGAGTTTGCGAAGTATGCCCAAGTCGGCCATACCCACGACGCTGCGGCGTTTGGTATCGGTTCGGCCACCACTGCCAAAGCAGGTCTGATTCGCTACGGTGGGTTGGTGAATGATGCCACCCTCGCGCTCGACGGCTCCTACGTGCTCCAACAATTGAAAGACGTGGCGAAGCTCGAAACGGTGCAGGATAACAGTGACCCAAATGCGGTGATTGATATCTTGCGTTATGGCGATAGTGGTAACGGTGCGATTCAAGCGGCGGTAACCATCACGGGTTGGATGGTGTCCATTAAAGCGAACAACTATTTTGTTGGTCGTGATTACACGGTGCCCCTGACCACGTTTAACGTCGCAGAGCTGTTCCCGGCAAGTCATGAAGACGCTACCTTTGGTATCTTTGTCGACATCGTTGATAATGCTGCGGTTTATGTCATCAAGGACAGTACCAATCTCGCCGAATCGGAAACGATGACACGAATTGGCGACATCCTGACTGACGAAGACAGTGTCATTTCTGCCAGTGTGCGTAACGTGACACGCTTGGGTGATTACCGTGAGTTGGCTGATCACGCAGCGAACGTCAGTGCCCATACGCCGCGCGCCATCACACAGGCGGCGTTTGGATACGCTTATGGAAAAGAAGGCGTTTCGTGGGCCGGTGGGTCAGGTTCGGTAAACACAGTGGGGAGCGACTGGCGAGAGTTCGCTATCGATGGTCTCACCGCATTAGCGGCAGGCTACCCCATTGACGGCGGATTCCAAGTCACCACGACCTATCGTGCCGGATGGGTGAACCTGACTCCCATCTCAAACGTTGATGGTGTGGGTGTTAACTTCACACCGGATGGCCCAACCGTTTCGGGCGATGGTCTCTTACACCTTTTGGCGTACAAGAAAGGTGCCGCCTTCCGCACTCTGTCTCTGGCCGTTACCACCTCGGGTGTCAACAGTCCTGCGGGTAACCGCGTCAATCTGGCATTGTGTGGCAACTGGGGCGCATCGAGTCCAATCCCGTCGTTCACGTTAGGCATCGACGAGTCCCGTTACGCGATAGCATCATCGTTTGACAGACTCAACCCACGTTTGACGTATGGTCTGAATCGCGGGCCTAGTATCGTCATTACCGGTACGGTGAAACTTCTGAACTACACCATCAAGTACACGCTCACGCTCTCCACGGTGGCGTCAACGATGGCGATTGAACGGGTAGAGACTGGGGAGAAAAGCACGACCGATATCACAAGCCGTTTGGCGGCCGCTGACATTGACGTTGCCATGCTTCTCAGCACCCCTGAAAAGCCGATTTATTTCGGCGTTGGGGCAGCGCTGAACAAGACGGTAAAAATCATGGTGAGTTACACCGACGGACAGTTCAACGCACAACACCGGTACGCTACGGCACTCGATTACCTGAACAACTACAGTGAGTTGGGTCGGGTACGGGTTTACGAAGGGGTGGCTGGAAACTCGCAAGCGATTGACCTCAAGAAGTCCGTTATCGCCAACAGCATTGCTGCGGCGAAATGGGGTGAAGGTCTGCCGAGCGCGATTAACTACGTGGGGATGGACTTGCAACTCGTAGGCAGTAACTACAAGGCCATCGTATTTAGAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
270e3aaa4d5b3ba16a6caa28ee1e801609f01082f54cc116722e1771c221cdf0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2978
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of giant Salmonella phage, pSal-SNUABM-04 Kwon,J., Park,S.C. and Kim,S.G. 2020-12-25 — GenBank