Protein

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Genbank accession
YP_009222180.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTFPATNSREATELIIDSGNQLHEIVNEDATTEVLTESGYIPSVRKALADTFLFQDPIPWQQGSDETAFNQLRTFDGDIYWAPTATTLNPIPMGATPVGDSNWGLAPVNPRGYKGLWPDTGGSAEKGETYQTQVGGTPTGEYYTALKNTSVDPIGDNVNWKANNDYGAVVGDGLVVKHRRGTQSEIDNFTPAIAEIVVNTTEKELVLGDGATPGGFPTSKKQNTMLSYGNLAQALSDTSLRKGYTLNTVERVSGSGGDGINWDVVLTSSVTPNGFDIVQCTGVPSLSLKMRNESNRFSSFGVIKESSDLSVFCRDVALGNYDANYLDYGTYNYSGNLFLADGQMLSGKGSGNTISSNKGTRLKPTNANAKIRLFPHAKLSDVFIDGEYSESNKAVDGIYIKPHDSGDTDYVSGDPTTLSCIWTKVSNVNIQKFSNNISIEGESFNLWFENLVSVAGRFKQVGGGETTLTACNLSDTTDQEIVFNDGGKISVHGGAIQNTNGGHPCIINQGKMLIQGTYMENARAGANNNGYLIDNYGSLTLVQPKSMAIADKAIRGRYGSKTYLRDVEFTGNNANTNEVFNGRGDNNNEGGGFLYFENLTFRSCLPASINYIEHAIGGYSDKGYSIESGNEKTLYLNEGANLTDLTSSGGTLTANNTAEYLTNGGSLRFVAAASVPSVTLTKTLRGLSGHLVMVRWAVLAKPSASDNTRFLANIGGDVTCAYVNVEFDADSANGNTDKWYYITTSAVLDPQLTEHTITCNLFTSLGGSGASNGTSHIDRIELVDCGLVHKV
Physico‐chemical
properties
protein length:792 AA
molecular weight: 84893,80630 Da
isoelectric point:4,86197
aromaticity:0,08712
hydropathy:-0,34205

Domains

Domains [InterPro]
DC_0194
STR
1–792
DC_0194
IPR058969
ATT
8–106
IPR058969 G3DSA:2.10.10.30
IPR041352
ATT
177–213
IPR041352
YP_009222180.1
1 792
Architecture
ATT
STR
ATT
STR
ATT 1-106 | STR 107-170 | ATT 171-225 | STR 226-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009222180.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 309 309 0,9959
Central domain 310 624 316 0,9838
C-terminal 625 792 167 0,9884
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-309
Central
310-624
C-terminal
625-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage qdvp001
[NCBI] 		1003177 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009222180.1 [NCBI]
Genbank nucleotide accession
NC_029057.1 [NCBI]
CDS location
range 98011 -> 100389
strand +
CDS
ATGAGTACTTTTCCAGCAACAAACAGTAGAGAAGCTACAGAGCTTATAATCGATAGTGGTAATCAGTTACATGAAATTGTTAACGAAGATGCCACAACTGAAGTACTAACAGAAAGTGGTTATATACCAAGTGTAAGGAAAGCCCTTGCAGATACTTTTTTGTTTCAAGACCCTATTCCTTGGCAGCAAGGTTCAGACGAGACTGCATTTAATCAGCTTAGAACTTTCGATGGTGATATTTATTGGGCACCTACCGCTACAACTTTAAACCCAATCCCAATGGGAGCCACCCCTGTTGGAGATAGTAATTGGGGTTTAGCTCCTGTTAATCCTAGAGGTTACAAAGGCTTATGGCCTGACACTGGCGGCAGTGCAGAAAAAGGTGAAACGTACCAAACTCAAGTTGGTGGAACACCAACAGGCGAATACTATACAGCACTGAAAAATACATCGGTTGACCCTATTGGTGATAATGTTAATTGGAAGGCAAACAATGATTACGGGGCTGTTGTTGGCGATGGTTTAGTCGTAAAACACAGACGTGGCACGCAGTCTGAAATCGACAACTTTACACCAGCAATCGCTGAGATTGTTGTCAACACTACTGAAAAAGAACTGGTGCTTGGGGACGGCGCTACACCCGGTGGATTCCCTACCTCTAAAAAACAAAACACAATGTTGTCTTACGGTAACTTAGCACAAGCACTATCCGACACCAGTTTGAGGAAAGGTTACACGCTAAACACCGTGGAAAGGGTTAGTGGCAGTGGTGGCGATGGTATCAACTGGGACGTTGTTCTCACATCGTCTGTAACACCGAACGGTTTTGATATTGTTCAGTGCACAGGTGTGCCTTCTTTATCATTAAAAATGCGGAATGAATCTAACAGGTTCTCTTCTTTCGGTGTCATCAAAGAGTCTTCAGATCTCAGCGTTTTCTGTCGAGATGTCGCATTGGGTAACTATGACGCTAACTACCTCGACTATGGCACCTACAATTACTCAGGCAACCTGTTCTTGGCTGACGGTCAGATGCTCAGTGGAAAAGGATCAGGAAACACCATCTCATCAAACAAAGGAACAAGACTAAAACCAACCAATGCTAATGCGAAAATCCGACTATTCCCTCATGCGAAATTGAGTGACGTTTTTATAGACGGCGAGTACTCGGAATCTAACAAAGCAGTGGATGGCATATACATTAAACCTCACGACTCGGGTGACACTGATTATGTGTCGGGTGACCCGACTACGCTATCCTGTATTTGGACAAAGGTATCAAACGTAAACATCCAAAAATTTTCCAACAACATCTCAATCGAAGGTGAATCATTTAACTTGTGGTTTGAGAATCTTGTTTCAGTAGCAGGTAGATTTAAGCAAGTCGGCGGAGGCGAAACTACGTTAACTGCCTGTAATTTATCCGACACCACTGACCAGGAAATTGTTTTTAATGACGGTGGTAAAATCTCAGTGCACGGTGGTGCAATCCAAAATACAAACGGTGGCCACCCTTGCATCATCAACCAAGGTAAGATGCTGATCCAAGGAACGTACATGGAGAACGCCCGAGCAGGAGCGAATAACAACGGCTACCTTATAGATAATTACGGCTCACTCACCCTCGTGCAGCCTAAATCTATGGCAATCGCAGATAAAGCGATTCGTGGTAGATACGGCAGTAAAACCTATTTGCGTGATGTGGAGTTTACAGGTAATAACGCCAACACCAATGAAGTTTTCAACGGACGCGGTGACAATAACAATGAGGGTGGTGGATTCCTTTACTTTGAGAACCTTACATTCAGAAGCTGCTTGCCTGCATCCATAAATTACATTGAACACGCAATCGGTGGTTATAGCGACAAAGGTTACTCCATTGAAAGTGGTAATGAAAAAACATTGTATCTGAACGAAGGGGCGAATCTGACTGATTTAACATCTTCAGGTGGCACACTGACTGCAAACAATACAGCAGAGTATTTAACAAATGGGGGATCGCTCCGGTTTGTAGCAGCAGCATCAGTACCAAGCGTTACACTCACAAAAACATTGCGAGGATTGTCTGGTCACTTGGTTATGGTCAGATGGGCTGTTTTAGCTAAACCGTCAGCATCTGACAACACGAGATTCCTAGCGAATATCGGTGGTGATGTGACTTGTGCTTATGTGAATGTTGAATTTGATGCAGACTCAGCTAATGGGAATACTGACAAATGGTATTACATAACAACAAGCGCAGTTCTCGACCCACAACTAACAGAGCATACTATCACATGTAATCTGTTCACGTCTCTTGGTGGCTCTGGAGCAAGTAATGGTACTAGCCATATCGACAGAATTGAGCTTGTTGACTGTGGTTTAGTTCATAAAGTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ccf39719496d596746cdbc469d5aaaf58c9f27fa50c38a5a0b42ff423c2543ff
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7759
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio parahaemolyticus phage qdvp001 Wang,W., Wang,J. and Lin,H. 2016-07-04 — GenBank