Protein

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Genbank accession
AGF91543.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MPDFASLSRLGGINGVQYNAGSASGNFEKENANFLKIFSGEVLTVFNRETIFKDLTQKRTISSGKSASFPITGRFSSRYHRPGDWITGQGNKGQIGEKIITIDDLLIADASIYDLEEAKLHWDVRSIYSRELGRALSRSYDQRLVRTLLTASESDGRVNDWDSKRFQLNNGTYASVSTNTITMSANFQTAELSYWAAGTVVYGEDSGAYGVITTAPTNGAATFVINPIGAIGTGSNSTFTVGERLFVLNKLPGGTSYTGINLNGAADRNARGDLIVENLMKACQALDEKDAPKDGRIAVLSPGAYYDVISSDRAINTDFNGGDGRNGTFAGNSVAQVAGFQIRTSNHLGVNSYTSGQTYAGLSNQSATTRGERPNYINGKDGSDGTTAAGTNDYYQDEQGNGSSVANLFGLCFTKESVGTVALKDISMQMTGAEYKAMTQSTMMVASYAVGHGILRPDCCVSLLHDGNPY
Physico‐chemical
properties
protein length:470 AA
molecular weight: 50291,04480 Da
isoelectric point:5,52688
aromaticity:0,08936
hydropathy:-0,33681

Domains

Domains [InterPro]
IPR049301
STR
69–160
IPR049301 IPR049301 IPR049301
IPR049301
STR
69–145
IPR049301
AGF91543.1
1 470
Architecture
STR
STR
STR
STR 69-160 | STR 252-366 | STR 381-463 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGF91543.1
1 470
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,6184
Central domain 137 337 202 0,4508
C-terminal 338 470 132 0,9272
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-136
Central
137-337
C-terminal
338-470

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-RSP2
[NCBI] 		756283 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGF91543.1 [NCBI]
Genbank nucleotide accession
HQ332139 [NCBI]
CDS location
range 28077 -> 29489
strand -
CDS
ATGCCAGATTTTGCATCATTATCCAGATTAGGTGGTATTAATGGCGTTCAATATAACGCTGGATCTGCCTCTGGTAATTTTGAAAAAGAAAATGCAAATTTTCTTAAAATTTTCTCTGGAGAAGTTCTTACTGTTTTTAACAGAGAGACAATCTTCAAAGATTTAACACAAAAACGTACTATATCTTCAGGTAAAAGTGCAAGCTTCCCAATAACAGGACGCTTTTCAAGTCGCTACCATCGCCCAGGTGATTGGATTACAGGTCAAGGTAACAAAGGTCAAATTGGTGAAAAAATAATCACTATTGATGATCTACTTATCGCTGACGCTAGTATATATGATTTAGAAGAAGCCAAGCTACATTGGGATGTTAGAAGCATTTACTCAAGAGAATTAGGAAGAGCACTTTCAAGAAGCTATGATCAGCGTCTTGTTCGTACACTTCTTACAGCTTCTGAATCAGATGGTCGTGTTAACGATTGGGATTCTAAGAGATTCCAGTTAAACAATGGTACTTATGCTTCTGTAAGTACAAACACCATCACTATGTCAGCCAACTTCCAAACTGCTGAGTTATCATACTGGGCTGCTGGAACTGTTGTATATGGTGAAGATTCAGGTGCTTATGGTGTTATAACAACTGCTCCTACAAACGGTGCAGCTACATTTGTTATTAACCCAATTGGAGCTATCGGTACTGGTTCTAATTCAACATTTACAGTTGGAGAGCGTTTATTTGTTCTTAACAAACTTCCTGGTGGAACTTCTTACACAGGTATCAACCTTAACGGTGCTGCTGATAGAAATGCTAGAGGTGACTTAATTGTTGAAAACTTGATGAAAGCTTGTCAAGCTCTTGATGAAAAAGATGCTCCTAAAGATGGACGTATAGCAGTATTAAGCCCAGGAGCTTATTACGATGTTATATCTTCTGACCGTGCAATTAACACCGACTTTAACGGTGGTGATGGACGTAATGGAACATTTGCTGGTAACTCAGTTGCTCAAGTAGCTGGTTTCCAAATCCGTACTTCTAACCACTTAGGCGTTAACAGCTACACAAGTGGTCAGACATATGCAGGTCTATCTAACCAATCTGCTACAACAAGAGGAGAGCGTCCTAACTATATCAATGGTAAGGATGGTTCTGATGGAACTACTGCTGCTGGTACTAATGATTACTACCAAGATGAGCAAGGAAATGGATCAAGTGTTGCTAACCTATTTGGACTTTGTTTTACAAAAGAATCTGTAGGTACAGTTGCACTTAAGGACATTTCAATGCAAATGACAGGTGCTGAGTACAAAGCAATGACTCAATCAACCATGATGGTTGCTTCTTATGCAGTTGGACACGGTATACTCCGTCCTGATTGCTGTGTAAGTTTACTTCATGATGGTAACCCATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
47d49a67e1e8fbe597e7b3e0f9da52bbea616029d2b28b917388db8fed534a6b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6743
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-RSP2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank