Protein

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Genbank accession
QIG77568.1 [GenBank]
Protein name
SGNH/GDSL hydrolase family protein
RBP type
TSP
Evidence DepoScope
Probability 0,52
Protein sequence
MAISKTRLLKSKLILINPRNNNRPLVRPTPTKRQLVASWCATPNLAPSLMASGGSYTANQVRNAHKIGRANIKDLRIQDIQARLTPGSGAEVASPAATSIWRRAIEIGSTTYPATYSGAISKDLVSGGLIETDNIVGAFALANSQIFTRGTRTVKNATTGVFDPALDNINGVNMVGPSSQGFRTVGGAQVNSVGAMNASGSGGGNAVWPWMITGIPDVPMAACRVIGDSIAQYLNDTNTGTTGGYIKRGLNNINGETFVWQFAAVDANKMQLQTPALAPLQWVNLDLLTCVILQCITNDIAANRTLAAIKADFISIATAVKNTIGPYGLPLLMVAVCCLNRGTFTGAQNTVKNDYNNWILSGADGYXXXXXXXVPSGNLVTAASGTNYLCSKIIVNTPSYATRSFKFHLSGFAATEGGNSPQETVVTGTIGTPGNSVVVDALFIKVAGVFYQCKFSGLDTITIADQSNGAWTDELVLRDVAPESEMEIWTFYHTAVGEKVWPVYRIQKHRGERIWGASDLNTLLAYKDTPLADCTASLDINYILVTQPAYYGPDFMVAKGDWDGRPVVLAVVDSIGEARQEYSAGADARGNLGWLRRWLDKADGIGRLPHFMIGMPGSHSVLELTGSGSTIATRRWAILDEITAFNNNKKPFTVILNQMGQNDTSTVYTTFFNTNYRSLVTRLRARYPGVKIVATTPLGRTVTTRTVTLTSVGTVVTAAIASGTNGLVTGQTVTIGGATQTEYNGNVIITVTGPNSFTYNFAGSATTPATGSITASNLYLQAEFQTYSSQNSWPADGTDNSGKWRLRNDILAKTSSCCDDSIDTYYAWVSSVKGGAWPGTLELPSTTVTVQAGTDGVETYSSIQVANANLFRGEXXXXXXXXIANGIPASEKNKLIT
Physico‐chemical
properties
protein length:897 AA
molecular weight: 94050,18910 Da
isoelectric point:8,74683
aromaticity:0,08163
hydropathy:-0,05159

Domains

Domains [InterPro]
SSF52266
STR
225–366
SSF52266 SSF52266 DC_2170
DC_1359
STR
291–580
DC_1359 IPR036514
QIG77568.1
1 897
Architecture
STR
STR
RBD
STR 225-580 | STR 611-746 | RBD 749-882 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG77568.1
1 897
Domain Start End Length (AA) Confidence
N-terminal 1 28 28 0,2963
Central domain 29 260 233 0,4025
C-terminal 261 897 636 0,3584
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-28
Central
29-260
C-terminal
261-897

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_TM21B
[NCBI] 		2509757 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG77568.1 [NCBI]
Genbank nucleotide accession
MN988560 [NCBI]
CDS location
range 127871 -> 130564
strand -
CDS
ATGGCAATCTCTAAAACCAGATTATTGAAGTCAAAATTAATCTTAATAAATCCTCGCAACAATAATCGACCTTTAGTTCGACCTACACCTACTAAAAGACAACTTGTAGCTAGTTGGTGCGCAACTCCTAACCTAGCTCCATCATTAATGGCTTCAGGTGGATCGTATACTGCTAACCAAGTTAGAAATGCTCATAAAATCGGGCGAGCTAATATTAAAGATCTTAGAATTCAGGATATACAAGCAAGACTGACACCTGGATCTGGAGCAGAAGTTGCATCTCCTGCTGCTACAAGTATCTGGAGGCGTGCAATTGAAATTGGATCAACTACGTATCCTGCAACCTATAGTGGTGCGATATCTAAAGATCTAGTCAGTGGTGGATTGATTGAAACTGACAATATTGTTGGAGCATTTGCTCTTGCTAATAGTCAGATCTTCACCAGAGGTACTAGAACTGTAAAGAATGCTACGACTGGAGTATTCGATCCAGCGCTTGACAATATTAATGGTGTCAACATGGTTGGCCCATCATCACAAGGATTTCGTACAGTAGGTGGTGCTCAGGTTAATAGCGTAGGTGCTATGAATGCATCTGGATCTGGTGGAGGTAACGCTGTATGGCCATGGATGATTACAGGAATTCCTGATGTTCCTATGGCTGCTTGTAGAGTCATCGGTGACAGTATTGCTCAGTATCTCAATGATACCAATACAGGAACGACTGGTGGTTACATCAAACGTGGATTAAATAATATTAATGGAGAGACGTTTGTATGGCAGTTTGCTGCTGTTGATGCTAATAAAATGCAACTTCAGACTCCTGCACTCGCTCCTCTTCAATGGGTCAATCTTGACCTGCTAACTTGTGTAATTCTACAATGTATTACTAACGATATTGCAGCAAATAGAACATTAGCAGCGATCAAAGCTGACTTCATCTCAATTGCTACTGCAGTTAAGAATACAATCGGACCTTATGGACTCCCGCTACTTATGGTAGCAGTCTGCTGCTTGAATCGTGGAACGTTCACAGGTGCTCAGAATACTGTAAAGAATGATTACAACAATTGGATTCTATCAGGAGCTGATGGATATTNNNNNNNNNNNNNNNNNNNNGTACCATCTGGTAACTTAGTTACAGCAGCATCTGGCACGAACTATCTTTGCAGTAAGATTATTGTAAATACTCCTTCATATGCAACACGTTCATTCAAATTCCATCTATCTGGATTCGCTGCAACAGAAGGTGGAAATTCACCTCAAGAAACAGTTGTAACTGGTACAATTGGTACTCCTGGTAACTCTGTAGTAGTCGATGCTTTGTTTATCAAAGTTGCTGGCGTATTCTATCAGTGCAAGTTCTCAGGTCTAGATACTATAACAATTGCTGACCAGAGTAATGGTGCATGGACGGATGAATTAGTTCTACGCGATGTTGCTCCTGAAAGTGAGATGGAAATTTGGACTTTCTATCATACTGCAGTAGGTGAGAAAGTCTGGCCAGTATATCGTATTCAGAAACATCGTGGTGAAAGAATATGGGGCGCTAGTGATCTCAATACACTTCTAGCTTATAAAGATACACCACTTGCAGACTGCACTGCATCACTCGATATAAATTACATTCTAGTAACTCAACCAGCATACTACGGTCCTGATTTTATGGTTGCTAAAGGTGACTGGGATGGTCGACCTGTAGTACTAGCAGTCGTTGATAGTATCGGTGAAGCTCGTCAAGAATATAGTGCAGGTGCTGATGCTCGAGGTAACTTAGGATGGTTACGTAGATGGCTAGATAAAGCAGACGGTATTGGACGTCTTCCTCACTTTATGATTGGTATGCCAGGATCACACTCTGTACTCGAACTTACAGGTAGTGGTAGTACGATTGCTACTCGTCGATGGGCAATTCTTGATGAAATCACTGCATTCAATAACAATAAGAAACCTTTTACTGTTATCTTGAATCAGATGGGTCAGAATGATACTAGTACAGTTTATACGACATTCTTCAATACCAATTACCGCAGCTTGGTTACCAGACTACGTGCACGTTATCCAGGTGTTAAGATCGTTGCGACGACCCCTCTCGGTCGTACAGTGACTACACGTACTGTCACATTGACATCTGTAGGAACTGTTGTAACTGCGGCTATCGCTTCTGGTACTAACGGACTTGTAACAGGTCAAACAGTTACGATTGGTGGAGCTACTCAAACTGAGTACAATGGTAATGTGATTATAACAGTCACAGGTCCAAATAGTTTCACTTATAACTTTGCAGGGTCTGCTACGACTCCTGCTACAGGGTCGATCACTGCTAGTAATCTATATCTTCAGGCAGAATTCCAGACATACTCATCTCAGAATTCATGGCCTGCTGATGGAACAGACAATAGTGGTAAATGGCGCCTGAGAAATGATATCTTAGCAAAGACATCATCATGTTGCGATGATTCTATTGATACTTATTACGCATGGGTATCAAGTGTAAAGGGTGGTGCATGGCCAGGTACGTTAGAACTACCTAGCACAACTGTCACTGTCCAAGCTGGTACTGATGGAGTAGAAACTTATTCATCTATTCAAGTTGCTAATGCTAACTTGTTTAGAGGAGAACANNNNNNNNNNNNNNNNNNNNGAATCGCTAATGGGATACCTGCTAGTGAGAAGAATAAGTTAATAACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c9124b47b4c6311a98896b08407340c8690400b23e37cf67ca403a1bf2116f12
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8010
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank