Protein

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Genbank accession
XPK42783.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MNAHTPFDAKQDWTNPYCQNSSNDPMVDALLGNAYHVVRTVYCNLGNLKLIYDFLNQYGMVLGVQSEAELKALTTEAKYARIYGFSRVGDRQVTDYLYVEGDRTGILPNDTTATGSWITVATSGAGDGSGGISSGGGAYIPWVYSNGSATGGETSINVPDGTVGVPFIIVNGDMQYVGRGFEFNVDDLSVTLAQPLEEGDEVVFLLTGVPAVPDNPNVNDWIQINWLYNNGVAVGGEQVIAIPYTFQSIPAVYKNGLRLYKGLTTESYTADPDNQRILLTETLATNDRLIVQLGGEARVLEAADHTLQEVARAANVKDSEVILSTDSTQFLNDKRVVYSVSEQKAYGLPVLPTNVYIQSVSDGKLTYSPGNITVDLLPLPESATSLKNKFAEENGAGLVGTTSGRTVQEEFDYRKTQAEKTEINILDYLPDNVIAALNDVNASMALGSVRTYIEQALAVATSENIGTGVTLRFPAGFFWLDSTLNLPKRTRIVGVYPETYFMALPNFTGTNVIAGSTGPAIVAIDNSGQDPFYIEGFQINADGSQPNVVGLHIGGCRNSVVRRISVSGTFDAAVVIHPKNATSGDVENLELSHVWTLGGGLVLRTNTDIDRGNLTGLSFRDCMFFSTIDNNPSWATSGNPSIRFSCHTDRQIFSCTFDRVGWASRATYAIYSESLAGNSEADVKGFRDIHFSDFAGESHNADGSLTSDCTYALLTKMRNSTFTNIQRSGAVTRGGIIMDGCEYVTFNSVSFADPNISTGTTAPRCVYQNSTNRFNRFINCDLTDATGSMFDLDGWTIANSVMYYFKGLFWDDSGTSIWECEQMSSTPGVMFARSTLNQNNGSAFPQQSGVTMLTSGDDLQVTFARDTTTKTFTIPITTSSGVFNNHDRVYVAFRHQFLSYGTNTVVKIGIGGKYVTISPQSGTDYFAVVSRARSLATSFDIQVTYSGASEDCIILIRDLIVSNKMPWLPNFTKVLLCD
Physico‐chemical
properties
protein length:978 AA
molecular weight: 106223,29480 Da
isoelectric point:4,72056
aromaticity:0,10020
hydropathy:-0,12689

Domains

Domains [InterPro]
DC_0265
STR
1–952
DC_0265
G3DSA:3.30.2020.50
ATT
300–381
G3DSA:3.30.2020.50 IPR012334
IPR011050
STR
453–761
IPR011050
XPK42783.1
1 978
Architecture
STR
ATT
STR
STR 1-299 | ATT 300-381 | STR 382-952 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK42783.1
1 978
Domain Start End Length (AA) Confidence
N-terminal 1 448 448 0,9957
Central domain 449 829 382 0,9907
C-terminal 830 978 148 0,9657
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-448
Central
449-829
C-terminal
830-978

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage RudolfBernhard_Bas96
[NCBI] 		3398430 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK42783.1 [NCBI]
Genbank nucleotide accession
PQ850623 [NCBI]
CDS location
range 2986 -> 5922
strand +
CDS
ATGAACGCACATACCCCCTTCGATGCAAAACAGGATTGGACCAATCCTTACTGCCAGAACAGTTCCAATGACCCAATGGTAGATGCACTACTAGGTAATGCTTATCATGTGGTTCGTACTGTCTACTGTAACTTGGGTAACCTGAAGCTTATCTACGACTTCCTGAACCAGTATGGGATGGTTCTTGGTGTACAGTCTGAAGCAGAACTTAAGGCGTTAACTACTGAAGCTAAGTATGCACGCATCTATGGTTTCTCCCGTGTAGGTGACCGTCAGGTTACAGACTACCTGTACGTGGAAGGTGATCGTACAGGCATTCTACCCAACGACACCACTGCAACAGGCTCATGGATTACTGTTGCTACTTCTGGTGCAGGTGATGGCAGTGGTGGTATTTCCTCTGGGGGAGGTGCATACATTCCTTGGGTATACAGCAACGGTTCTGCTACTGGTGGGGAAACTTCCATTAACGTACCGGATGGGACAGTAGGTGTACCATTCATTATTGTTAATGGTGATATGCAGTATGTAGGACGAGGCTTTGAGTTTAACGTAGACGATCTGTCCGTAACTCTGGCTCAACCTCTGGAAGAAGGTGATGAAGTAGTATTCCTACTGACTGGGGTTCCTGCTGTACCGGACAACCCTAATGTTAATGACTGGATTCAGATTAATTGGTTATATAACAATGGTGTTGCTGTAGGTGGTGAGCAGGTTATTGCTATTCCATACACTTTCCAGTCTATTCCAGCCGTGTATAAGAATGGGCTTCGTTTGTATAAAGGATTAACCACTGAATCATATACTGCTGACCCGGATAACCAGCGTATCCTTCTTACTGAGACACTGGCAACCAATGACCGATTGATTGTACAGCTTGGTGGTGAAGCACGGGTATTGGAAGCAGCAGACCATACTCTTCAGGAAGTTGCTCGTGCAGCTAACGTTAAGGATAGTGAGGTAATTCTTAGTACAGATAGTACCCAGTTCCTGAATGACAAGAGGGTTGTTTATTCTGTTAGTGAACAGAAGGCATATGGTTTGCCTGTATTACCAACAAATGTATACATTCAGTCCGTTAGTGACGGTAAGTTAACATACTCCCCCGGTAACATTACGGTTGATTTACTTCCGTTACCAGAATCTGCTACTAGTTTAAAAAATAAATTTGCAGAAGAAAATGGTGCAGGGCTAGTTGGTACAACATCCGGCAGGACCGTACAGGAAGAGTTTGACTACCGCAAAACTCAAGCGGAAAAAACAGAGATAAACATACTTGACTACCTTCCGGATAACGTGATCGCGGCGCTAAACGATGTTAATGCATCAATGGCTCTAGGAAGCGTAAGGACATACATCGAACAGGCTTTGGCGGTAGCAACGAGCGAGAATATCGGTACTGGGGTTACTTTACGTTTCCCGGCTGGGTTCTTTTGGCTTGATTCTACTCTTAACCTTCCTAAAAGGACGCGTATTGTTGGAGTCTACCCAGAAACATACTTTATGGCACTCCCCAACTTTACCGGCACTAACGTAATTGCTGGCTCCACGGGACCAGCTATAGTCGCTATTGATAACTCAGGGCAAGACCCATTTTATATCGAAGGTTTTCAGATAAACGCAGATGGTTCCCAGCCGAATGTGGTTGGGCTGCACATTGGCGGCTGCCGTAATTCCGTCGTCCGTCGGATATCTGTATCGGGGACCTTCGATGCTGCTGTTGTTATCCACCCTAAAAACGCAACATCTGGGGACGTGGAGAACCTGGAATTAAGCCACGTATGGACATTAGGTGGTGGGCTTGTGCTCAGGACTAATACAGATATCGACCGTGGAAATTTAACAGGTCTGTCATTCCGGGATTGTATGTTTTTCAGCACAATCGACAACAACCCTTCATGGGCGACGTCCGGTAACCCATCCATCAGATTCTCATGTCATACTGACAGACAGATTTTTTCATGTACATTCGACCGCGTTGGTTGGGCTAGTCGTGCGACATACGCTATTTACTCAGAAAGTCTTGCAGGAAATAGCGAGGCAGATGTAAAAGGTTTCCGTGATATCCATTTCTCTGATTTCGCCGGAGAATCTCACAACGCTGACGGCTCGCTAACATCAGACTGTACGTATGCCCTACTTACGAAGATGCGGAATAGCACATTTACTAACATCCAACGCTCTGGCGCCGTGACCCGTGGGGGTATCATTATGGATGGGTGCGAATATGTGACCTTCAACTCAGTGTCTTTTGCAGATCCCAATATTAGCACTGGAACAACTGCCCCACGGTGCGTATATCAAAACTCTACTAATAGATTTAACCGTTTTATCAATTGTGACTTAACAGATGCTACTGGTAGTATGTTTGATTTAGATGGTTGGACCATAGCTAACAGTGTGATGTACTACTTTAAGGGCCTGTTCTGGGATGACAGTGGGACTAGTATCTGGGAATGTGAACAAATGTCTAGCACTCCTGGCGTTATGTTCGCAAGAAGTACATTAAACCAAAATAACGGGTCGGCCTTCCCTCAACAGTCTGGGGTTACAATGCTAACTTCAGGCGACGACCTTCAAGTTACTTTTGCAAGAGACACCACTACTAAAACCTTTACAATACCTATTACTACATCTTCTGGTGTATTTAATAACCATGACAGGGTGTATGTGGCATTTAGACATCAGTTCCTTAGCTATGGAACCAATACTGTAGTGAAAATAGGGATTGGAGGTAAGTATGTTACAATCAGTCCTCAATCGGGAACTGATTATTTTGCGGTGGTTAGTAGAGCACGTTCTTTGGCAACATCATTTGATATCCAAGTCACTTATAGTGGCGCTTCGGAAGATTGCATTATTCTTATTAGAGATTTAATTGTATCAAATAAAATGCCGTGGCTCCCTAACTTCACCAAAGTCTTACTTTGCGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d7124aae84c656ce6792d69dfd52fd5c5a37b080ed285365daa0e6a822aa083c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2868
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank