Protein

View in Explore

Genbank accession

QEI25502.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,91

Evidence RBPdetect2

Probability 0,96

Protein sequence

MSQAVITKAFTEWKAQQAINNQPVTLDEFIFAYIPGLDADKPIDNTETMPAADKIVDRLPVSKTGVVNENSVVYSVTLGADVGDYNFNWIGLANKATGTLAMIIHAPTQRKIKNANGQQGNVLVRSMLMEYSGAREATEITTPAETWQIDFTARLSAMDERQRRENIDLYGAAAFFDSGYLVAKSGNQFFVTKGVGYVAGLRTELPADLNINASAKPTKVWLDVSWTGTLTSEWAVQSKITVAADLADYVLGGVQHYVFAVASIDAAGNITDLRPKGTLNGQAASNALSEHEKSRNHPDASTDEKGFVQLSSAIDSDSEKLAATPKAVKAANDNADKRLVKDQNGDDIPDKSLFVRNIGALPANGTAVAANRLASRGALPALTGATRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGVNGAPAPAYIRSHRDNAEAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGYALMQGQAFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPASGRAVLSQEMDGNKSHSHGARALDTDLGTKGTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA

Physico‐chemical properties

protein length:	648 AA
molecular weight:	69110,05580 Da
isoelectric point:	5,58133
aromaticity:	0,08179
hydropathy:	-0,30602

Domains

Domains [InterPro]

DC_1466
ATT
1–187

DC_1466 DC_0163

IPR022225
ATT
3–157

IPR022225 IPR005068 IPR051934

SSF88874
STR
456–647

SSF88874

IPR037053
ATT
464–516

IPR037053

IPR011083
ATT
468–515

IPR011083

QEI25502.1

1 648

Architecture

ATT

STR

ATT

STR

ATT 1-187 | STR 211-463 | ATT 464-516 | STR 517-648

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1466	ATT	DC_1466	1	187	Novel HMM	DC_1466	N-terminal	Low	Positional only	30 proteins / 30 hits
IPR022225	ATT	DC_0271	3	157	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
DC_0163	STR	DC_0163	211	648	Novel HMM	DC_0163	Central	Low	Positional only	47 proteins / 47 hits
IPR005068	STR	DC_0738	301	340	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR051934	Unmapped	-	359	648	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	456	647	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	464	516	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	468	515	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage SW5 [NCBI]	2592222	Uroviricota > Caudoviricetes > Peduoviridae > Irrigatiovirus SI7 >
Host	Salmonella sp. [NCBI]	599	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

QEI25502.1 [NCBI]

Genbank nucleotide accession

MK972713.1 [NCBI]

CDS location

range 24380 -> 26326
strand +

CDS

ATGTCACAGGCTGTTATTACAAAAGCATTTACAGAGTGGAAAGCCCAGCAGGCAATTAATAATCAGCCCGTCACGCTGGATGAATTTATTTTCGCGTATATTCCGGGACTGGATGCTGATAAACCGATTGATAATACCGAGACAATGCCCGCAGCGGATAAAATTGTTGATCGCCTGCCGGTAAGTAAAACCGGCGTTGTGAATGAAAATTCTGTCGTTTATTCCGTCACGCTGGGGGCGGATGTGGGCGATTATAATTTCAACTGGATCGGGCTGGCAAATAAAGCCACCGGCACACTGGCGATGATTATTCACGCCCCGACTCAGCGCAAAATTAAAAATGCGAACGGCCAGCAGGGAAACGTGTTGGTTCGTTCCATGCTGATGGAATACAGCGGAGCCAGGGAAGCAACAGAAATTACCACCCCGGCAGAGACATGGCAGATTGATTTCACTGCCCGCCTTTCGGCAATGGATGAACGCCAGCGCCGCGAAAATATCGATCTGTATGGTGCCGCGGCATTCTTTGATTCGGGTTATCTGGTCGCAAAGTCCGGTAATCAGTTCTTTGTCACAAAAGGGGTGGGATACGTCGCCGGGTTACGCACTGAATTGCCCGCAGACCTGAACATCAACGCATCTGCGAAGCCGACAAAAGTCTGGCTTGATGTCAGCTGGACCGGGACGTTAACGAGCGAATGGGCAGTACAGAGCAAAATCACCGTTGCCGCAGATCTTGCCGATTATGTGCTGGGCGGTGTACAGCATTATGTCTTTGCGGTGGCGAGTATTGATGCTGCCGGAAATATCACAGACCTGCGCCCGAAAGGCACGCTTAACGGCCAGGCGGCCAGCAATGCGCTGAGTGAGCATGAAAAATCGCGCAATCACCCTGATGCATCAACCGATGAAAAAGGATTTGTGCAGTTAAGCAGTGCAATAGACAGCGATTCCGAAAAGCTGGCCGCCACGCCAAAGGCAGTAAAAGCGGCTAATGACAACGCAGATAAGCGACTGGTTAAAGACCAGAACGGCGATGACATTCCGGACAAAAGTTTATTTGTGCGTAATATCGGAGCACTTCCTGCCAACGGTACGGCTGTTGCAGCGAACAGACTGGCATCACGCGGTGCGCTTCCGGCACTGACTGGTGCGACAAGAGGCAGCGATAGCGGCCTGATAATGGGCGAGGTTTACAACAATGGCTATCCAACACAATACGGGAATATTTTACGTCTGACCGGAACCGGTGACGGGGAGATATTGATCGGATGGAGCGGGGTTAATGGTGCTCCTGCGCCTGCATATATTCGCAGCCACAGAGATAACGCCGAGGCTGAGTGGTCCGAATGGGCAATGCTCTACACCACACTAAACCCGCCACCGGATTCGCATCCAGTAGGGGCGGCGATTGCATGGCCGTCTGATGCTACTCCAGCCGGTTACGCCCTGATGCAGGGGCAAGCATTTGATAAATCTGCTTACCCGTTACTGGCTATAGCGTATCCGTCCGGTGTCATCCCTGACATGCGAGGCTGGACAATCAAAGGTAAGCCCGCCAGCGGGCGGGCTGTACTGTCTCAGGAAATGGACGGTAACAAATCGCACAGCCACGGCGCGCGGGCGCTGGATACCGATCTGGGAACGAAAGGCACGTCGTCATTTGATTACGGTACGAAATCGACCAATACCACGGGCAACCATACTCACCAGTTCGGCGGTTATATCAATTCATACTGGGGAGATTCCAATCACACCTCATTTCAGCCTGGAGGTGGTGCGTGGACACAGGCCGCTGGCGACCATGCGCATACAGTTTATATCGGAGGACACGAGCACACGATGTATATAGGTCCACACGGACACGTCGTTATTGTGGACGCAGACGGTAATGCGGAAACCACAGTGAAGAATATCGCGTTTAACTATATTGTGAGGCTGGCATAA

Genome Context

Tertiary structure

PDB ID

d4966d95c5e6339e664c57af7614e881f610cb4ea0db1426dee8f20e6090bb07

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7997

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing	Fong,K., Tremblay,D., Delaquis,P., Moineau,S., Goodridge,L., Levesque,R. and Wang,S.	2019-09-14	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature