Protein

View in Explore
Genbank accession
QGZ18093.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAQLSKKIELYCEANGVSNVDFENDVRLQDDSNGQGAYIAEWNLDIAQPTDEQLASYETAANTAEANAQVDATRRNQYGSWNDQLDEIFHDIDAWKTRIQGIKDNNPKS
Physico‐chemical
properties
protein length:109 AA
molecular weight: 12282,07580 Da
isoelectric point:4,22293
aromaticity:0,08257
hydropathy:-0,89541

Domains

Domains [InterPro]
DC_0890
STR
1–109
DC_0890
IPR035950
STR
10–67
IPR035950
IPR019094
STR
11–66
IPR019094
IPR035950
STR
21–57
IPR035950
QGZ18093.1
1 109
Architecture
STR
STR 1-109
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC106P
[NCBI] 		2686460 No lineage information
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18093.1 [NCBI]
Genbank nucleotide accession
MN698244.1 [NCBI]
CDS location
range 21792 -> 22121
strand -
CDS
ATGGCACAACTAAGTAAAAAAATAGAACTCTACTGCGAAGCTAATGGTGTTTCAAATGTAGATTTTGAAAATGATGTTAGGTTGCAAGACGACAGTAATGGTCAAGGTGCGTATATAGCTGAGTGGAACTTAGATATTGCACAACCAACTGATGAGCAATTAGCATCATATGAAACTGCTGCAAATACTGCTGAAGCTAATGCTCAAGTAGATGCAACAAGAAGAAACCAATATGGTTCTTGGAACGATCAATTAGATGAAATATTCCATGACATAGATGCTTGGAAAACTAGAATACAAGGTATAAAAGATAATAACCCAAAGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b6af7eba3436bd2307b4b6d4e8ba27295f9da74d499887fe63418b710001ca04
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9682
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank