Protein

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Genbank accession
YP_001294816.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MLAITATDWYPYGDVIGDVVGVEASGIYPDGSLAAFKLISGTNTEVRNVQVRGVSGTTRTRPLCIRGDEVGDTTATNILFEDVHVIVPAEHSTAGASEGLLYFQGSGAGGLGGLGIVSGCDARNVTIRNSSVNRQSTSDGGLVHILDGSRGVKVDNLVVENIHNRPLAGVGIGNGGQTHALYADAPLGVVRISGCTARGGSGTGWDGRVRRCGAGVDHGPVRHQSARGGRVSGHRAHSWADRPPHPPGCGVPDERRPDGEQQPGQGGDGGADAGCRPHPPHRGSHPLHRRTHQGLPLQRHRSQRGGREDHLP
Physico‐chemical
properties
protein length:312 AA
molecular weight: 32501,56750 Da
isoelectric point:8,29619
aromaticity:0,03526
hydropathy:-0,49231

Domains

Domains [InterPro]
IPR011050
STR
34–204
IPR011050
YP_001294816.1
1 312
Architecture
STR
STR 34-204 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001294816.1
1 312
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0023
Central domain 11 213 204 0,9895
C-terminal 214 312 98 0,6600
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-213
C-terminal
214-312

Taxonomy

  Name Taxonomy ID Lineage
Phage Microbacterium phage Min1
[NCBI] 		446529 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Microbacterium nematophilum
[NCBI] 		151262 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Micrococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001294816.1 [NCBI]
Genbank nucleotide accession
NC_009603 [NCBI]
CDS location
range 34010 -> 34948
strand +
CDS
ATGCTCGCCATCACCGCGACCGACTGGTACCCGTACGGGGATGTGATCGGGGATGTCGTCGGCGTCGAAGCGTCCGGCATCTACCCGGACGGCTCCCTCGCCGCGTTCAAGCTCATCTCCGGCACTAATACCGAAGTGAGGAATGTCCAGGTCCGTGGCGTGAGCGGCACGACCCGGACACGGCCGCTGTGCATCCGCGGTGACGAGGTCGGCGACACCACAGCCACGAACATTCTTTTCGAGGATGTGCATGTGATCGTGCCCGCCGAGCACTCCACGGCGGGCGCGTCGGAGGGTCTGCTGTATTTCCAGGGGTCTGGTGCGGGTGGTCTGGGCGGTCTCGGTATCGTGTCCGGCTGCGACGCCCGCAACGTCACCATCCGCAACTCCTCCGTGAACCGCCAGTCCACCAGTGATGGGGGTCTGGTGCACATCCTCGACGGGTCCCGCGGCGTGAAGGTCGACAACCTGGTCGTCGAGAACATCCATAACCGGCCCCTCGCCGGGGTCGGGATCGGGAATGGCGGTCAGACGCACGCGCTCTACGCGGATGCTCCGCTTGGGGTGGTCAGGATCTCTGGGTGTACCGCCCGGGGCGGGTCCGGGACCGGGTGGGACGGTCGCGTACGTCGGTGCGGCGCAGGGGTCGATCACGGACCTGTCCGTCACCAAAGCGCGCGGGGAGGCAGGGTCTCGGGGCATCGTGCACATTCGTGGGCCGATCGCCCGCCTCACCCTCCAGGATGTGGAGTCCCCGACGAACGTCGTCCAGACGGAGAACAACAGCCGGGTCAGGGGGGCGATGGTGGTGCGGATGCAGGATGTCGCCCTCACCCACCCCACCGGGGGTCGCATCCTCTCCACCGCCGGACCCACCAAGGCCTACCTCTCCAACGTCACCGCAGCCAGCGAGGCGGGCGGGAAGATCACCTTCCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0a961f8c7e08a0d6e6fb8ed1aa25b198859ce621b1ad3ea4146188c373cd7323
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5438
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and complete nucleotide sequence of a novel temperate bacteriophage Min1, isolated from the nematode pathogen Microbacterium nematophilum Akimkina,T., Venien-Bryan,C. and Hodgkin,J. 2007 17869067 GenBank