Protein

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Genbank accession
AGN33528.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAVTRVSDNQISTGTTAVITALSFLNADSVLRLPSGDTSNDRPSGVSVGTLRFNTDNDNAEIYVADADGQGNAGWTEVSGGGPSVGEDSVIRTNHDTISENLTVGPTANGDDKFTNGFSVGPIQIATNSTVTVEADAVWSII
Physico‐chemical
properties
protein length:142 AA
molecular weight: 14618,59970 Da
isoelectric point:4,05003
aromaticity:0,04930
hydropathy:-0,17676

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-IOM18
[NCBI] 		754039 Uroviricota > Caudoviricetes > Pantevenvirales > Tefnutvirus > Tefnutvirus siom18
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN33528.1 [NCBI]
Genbank nucleotide accession
HQ317383.1 [NCBI]
CDS location
range 17852 -> 18280
strand +
CDS
ATGGCGGTTACTAGAGTAAGTGATAACCAAATCAGCACTGGCACTACAGCAGTCATTACTGCTCTATCATTTCTTAACGCTGATAGCGTATTAAGATTACCTTCTGGTGATACTAGCAATGATAGACCCAGTGGTGTTTCTGTAGGTACATTACGTTTCAATACTGATAACGATAATGCAGAGATTTATGTTGCTGATGCTGATGGGCAAGGCAATGCTGGATGGACTGAAGTTTCTGGCGGTGGTCCTTCCGTTGGTGAAGATAGTGTGATTAGAACTAATCACGATACCATTTCAGAGAATCTTACAGTTGGTCCTACTGCAAATGGTGATGATAAGTTTACTAATGGTTTTAGTGTTGGTCCTATTCAGATTGCCACTAATTCTACAGTAACAGTTGAAGCAGATGCTGTTTGGAGTATTATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd4f45e2332b119c21260fb9350c25d9f7d2b5a51e6a9ee0a3149fed4e56a136
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8990
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-IOM18 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank