Protein

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Genbank accession
AFX93502.1 [GenBank]
Protein name
putative polygalacturonase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSTRRPNFNNADLEQAYYYKRRSFGNGYTIKFQREALLWDSADGGDGNYYIWGGALPKSVPSGSTPATSGGLGNTAWINIGTAALANVLYDMLTPEMFGAKGDGVADDTAAVVECWKSAKAKASDQFRIEVVMRHKYLIRAQTLIGSSNVRYSGGGTITTDSTALNYTMITFDDCANFIFTDIKVTRSAFPDPSVMWSKTNQAMVMTNCTDFLVSQCDVSYHTDAISVSSGARYIIEGNRTHELGEEGIAIRRSRKFVCRNNFVFNHHGDGILLKTANVFCHDGLIEGNHVFDGLKKSGIAGGARGGGITLNDEVIGTVSGINFSSLGVVGNLVRNTSYGLSFANVDDLRIEANSCIDIERFGINWDTTVFNNPSLNPMYRGAVVGNNVVNCGQVGISATSLNGINIFNVLVTGNTVESAGTQTGAEYPGITVSGGVVTSNIVTNCTVAYQGSDTVATGNRFIGSTRTTDGVGAVWLKIGGSGVFSDNVVVDSNKGYIRLSSANDLSFSGNDIALQSSFAGLYFTGTFTTGVKAGGNVYSCPNFPSVSNFNVGPTVIRSMELTPAEFGRKRHVYDGVAASGLTHLVGDVVSNRAPAVGFPMDYVVSAINGDGTPALTPLNFNRRLVTVTQDLVVTNGTFIQIKVTGLVGVLSNWMPEGVATSVPAQGLTITAHVTNAQEVTFLVWNHSGNDRNITGVTLSTYVHSVN
Physico‐chemical
properties
protein length:707 AA
molecular weight: 75201,37950 Da
isoelectric point:6,07640
aromaticity:0,09052
hydropathy:-0,01103

Domains

Domains [InterPro]
DC_0352
STR
2–704
DC_0352
G3DSA:2.10.10.80
ATT
17–91
G3DSA:2.10.10.80 IPR011050 IPR006626 IPR006626 IPR006626
IPR040775
RBD
21–81
IPR040775 IPR012334
IPR039448
ENZ
200–315
IPR039448 IPR006626 IPR006626
IPR006626
Unmapped
209–230
IPR006626 IPR006626 IPR006626
AFX93502.1
1 707
Architecture
STR
ATT
STR
STR 2-16 | ATT 17-91 | STR 92-704 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFX93502.1
1 707
Domain Start End Length (AA) Confidence
N-terminal 1 109 109 0,9872
Central domain 110 563 455 0,9926
C-terminal 564 707 143 0,9861
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-109
Central
110-563
C-terminal
564-707

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage phiMAM1
[NCBI] 		1262513 Uroviricota > Caudoviricetes > Pantevenvirales > Miltonvirus > Miltonvirus MAM1
Host Serratia sp.
[NCBI] 		616 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Serratia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFX93502.1 [NCBI]
Genbank nucleotide accession
JX878496 [NCBI]
CDS location
range 30102 -> 32225
strand +
CDS
ATGTCAACTAGACGCCCCAATTTTAACAACGCCGATCTTGAGCAAGCGTATTATTACAAACGTCGCTCGTTTGGTAATGGATATACCATCAAATTCCAACGAGAAGCACTGCTATGGGATTCTGCTGATGGTGGTGATGGCAACTATTACATTTGGGGAGGCGCACTCCCTAAATCTGTTCCATCTGGTTCCACTCCCGCCACCAGTGGTGGCCTGGGGAATACCGCATGGATTAATATCGGCACGGCGGCGTTGGCCAACGTGTTATATGACATGCTGACGCCGGAAATGTTCGGTGCTAAAGGTGATGGCGTGGCAGATGACACTGCTGCGGTAGTGGAATGCTGGAAGTCTGCAAAGGCCAAGGCCTCCGATCAGTTTAGAATCGAAGTTGTGATGCGCCACAAATATCTTATCCGCGCTCAGACCTTGATCGGTTCTAGCAATGTTCGATACAGCGGGGGCGGCACGATCACCACAGACAGTACTGCTTTGAACTACACTATGATAACATTTGATGACTGTGCCAATTTCATATTCACAGATATCAAGGTAACGCGGTCAGCATTTCCTGATCCTTCTGTCATGTGGTCTAAAACTAATCAGGCCATGGTGATGACCAACTGCACCGATTTCTTGGTGTCACAATGCGACGTTTCTTACCACACTGATGCGATATCTGTGTCATCTGGTGCACGATACATAATCGAAGGGAACCGAACTCACGAACTCGGTGAAGAAGGCATTGCTATTCGCCGGTCGCGCAAATTCGTTTGCCGTAACAATTTTGTGTTCAACCACCATGGCGACGGTATTTTGTTGAAGACCGCAAACGTGTTCTGTCATGACGGCCTGATCGAAGGGAACCACGTATTCGATGGTCTGAAGAAATCTGGTATAGCAGGTGGCGCTCGTGGCGGTGGTATCACTCTGAATGATGAAGTCATCGGGACAGTATCTGGTATTAACTTCAGTTCTCTCGGCGTTGTCGGAAACTTGGTGCGTAACACATCCTATGGGTTGTCATTCGCTAACGTGGACGACCTCAGAATAGAGGCCAACTCTTGTATTGACATCGAAAGATTTGGGATAAACTGGGACACCACAGTGTTTAACAACCCATCCCTCAACCCGATGTACAGGGGTGCCGTGGTAGGCAACAACGTGGTCAATTGCGGCCAGGTCGGGATTAGTGCAACGTCCCTGAACGGAATCAACATATTCAACGTGTTGGTGACTGGTAACACTGTGGAAAGCGCGGGCACACAGACTGGGGCGGAATACCCTGGGATAACTGTCAGTGGTGGGGTTGTAACTTCCAACATCGTCACCAACTGTACTGTGGCGTACCAAGGATCGGATACTGTCGCAACAGGGAACCGCTTTATTGGTTCTACCAGGACGACTGATGGCGTGGGCGCGGTTTGGCTGAAGATCGGCGGCTCTGGAGTGTTCAGTGACAACGTGGTGGTTGATTCCAACAAGGGTTATATTCGGTTGTCCAGCGCCAATGACCTTTCTTTCAGTGGGAACGATATTGCTCTGCAGTCCTCGTTTGCAGGCTTGTATTTCACAGGGACATTTACCACTGGTGTCAAAGCCGGAGGGAACGTTTACTCGTGCCCGAATTTCCCCAGCGTTAGCAACTTTAACGTGGGACCGACCGTGATTCGTTCTATGGAGTTGACTCCAGCAGAGTTCGGGCGCAAGCGGCACGTTTACGACGGTGTTGCTGCCTCTGGTTTGACTCACCTTGTCGGGGATGTTGTGTCTAACCGCGCCCCTGCCGTCGGATTCCCAATGGATTATGTGGTTTCGGCAATAAACGGTGATGGAACTCCGGCCTTAACACCATTGAATTTCAACCGGCGCTTGGTGACCGTCACCCAAGATTTAGTTGTCACCAACGGCACGTTCATACAGATCAAAGTGACGGGGTTGGTGGGGGTGTTATCCAACTGGATGCCAGAAGGAGTGGCTACTAGTGTGCCAGCGCAAGGGTTGACTATCACGGCGCACGTGACCAATGCGCAGGAAGTAACATTCCTCGTCTGGAACCACTCAGGCAACGACAGAAATATCACGGGCGTAACGCTCAGCACATATGTTCACAGCGTGAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d4691df7cc6bd27f10983820063e3d13a924162c5176e0ba493cc7f9efb8d692
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7982
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50