Protein

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Genbank accession
AZV01470.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MRGVCTSTPTAQFKFNYNNGAVITVHSAPTVSSTKPANAVDGYVVIDYNTFTEAQKPSAGDVGAYTKAETDQKIATAISNSTDLNKIYPVGMVTFFASNVNPNTAFAGTTWAYLSNGQFRTIRIASSTGEDVGSVGGSDSKSIAVGHLPSHTHSFSGTTTTFDYGTKYTDAQGAHDHDRGNMEISGAGGHAHNVANSSFTVRWNGTGAGGSKMSSQASRGYTGSQFTYGTPVNFYASRTWTGRTSWVGDHTHTVTIGAHAHTLSGTTGGTGSGAAFDVTNAFIKLMAWVKTA
Physico‐chemical
properties
protein length:292 AA
molecular weight: 30516,98470 Da
isoelectric point:8,56819
aromaticity:0,10274
hydropathy:-0,32295

Domains

Domains [InterPro]
DC_0033
STR
5–292
DC_0033
IPR053827
ATT
84–201
IPR053827
AZV01470.1
1 292
Architecture
STR
ATT
STR
STR 5-83 | ATT 84-201 | STR 202-292
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage vB_SflM_004
[NCBI] 		2500763 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZV01470.1 [NCBI]
Genbank nucleotide accession
MK295205 [NCBI]
CDS location
range 56888 -> 57766
strand -
CDS
ATGCGTGGAGTTTGTACATCTACACCGACTGCACAGTTTAAATTTAACTACAACAATGGTGCAGTTATTACTGTCCATTCTGCTCCTACTGTGTCATCTACTAAGCCAGCTAATGCGGTTGATGGTTATGTGGTAATTGATTACAACACTTTCACGGAAGCACAGAAACCTTCTGCTGGAGATGTTGGAGCTTACACTAAAGCAGAGACTGACCAGAAGATTGCAACAGCTATTTCTAACTCAACAGACCTTAACAAAATCTATCCAGTTGGTATGGTAACGTTCTTTGCATCGAATGTAAACCCTAATACAGCATTTGCAGGAACTACTTGGGCTTACCTATCAAATGGTCAGTTCAGAACTATTAGAATTGCCTCTTCAACTGGTGAGGATGTTGGTTCTGTAGGTGGCTCAGACTCTAAGAGTATTGCTGTAGGTCATCTTCCAAGTCATACTCACAGCTTCTCTGGAACAACCACTACCTTTGATTATGGTACTAAGTACACAGACGCTCAAGGTGCTCACGACCATGACAGAGGTAACATGGAAATCTCTGGTGCGGGTGGTCACGCCCATAATGTTGCAAATAGCAGCTTCACAGTAAGATGGAACGGGACTGGTGCAGGTGGTAGTAAGATGTCATCGCAAGCCTCTAGAGGTTATACTGGTTCACAGTTCACTTATGGTACACCAGTTAACTTCTACGCATCAAGAACTTGGACAGGGAGAACAAGTTGGGTAGGTGACCATACACACACTGTGACAATTGGTGCTCATGCCCACACATTAAGTGGTACAACTGGTGGTACAGGTTCTGGTGCAGCATTTGATGTTACTAACGCCTTTATTAAATTAATGGCTTGGGTAAAAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c07005806f79042a61946b2330c7b0279676abb24df8d17193f8f595cc0453b7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6584
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of novel bacteriophages infecting Shigella spp. and E. coli O157: H7 Shahin,K., Bao,H. and Wang,R. 2020-06-17 — GenBank