Protein

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Genbank accession
YP_009042543.1 [GenBank]
Protein name
minor tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MAGDRWVKVIKPNKSDILLTEIPGLHFLEWNIPSPVTNSQELELTGIDGVLPSRNTYGAFDLELLFYFAGTDSKDLNLFSQRMKSLINERDPFYIVHSDMPRFKYAVNSAEIEYDKITVADMNFTIKFHCYKGYAESLYSTKHYSLSDDNWQFQSGLVTDEEIKYTFHSNGFKVFNGGDDEINPLYRHNLKIYINVDAPNGFTIRNKTNGTSLTYKGSLKKNRTFVINGIYSIIDNKRVGKDTDYGIITLEQGYNDIEIDGTSIGSAKCRFDFNFIYR
Physico‐chemical
properties
protein length:278 AA
molecular weight: 31936,53580 Da
isoelectric point:5,72001
aromaticity:0,13669
hydropathy:-0,43561

Domains

Domains [InterPro]
G3DSA:2.40.30.200
ATT
19–135
G3DSA:2.40.30.200 DC_0197
IPR008841
STR
35–130
IPR008841
YP_009042543.1
1 278
Architecture
ATT
STR
ATT 19-135 | STR 136-278
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009042543.1
1 278
Domain Start End Length (AA) Confidence
N-terminal 1 194 194 0,7236
Central domain 195 267 74 0,1363
C-terminal 268 278 10 0,7022
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-194
Central
195-267
C-terminal
268-278

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage 6ec
[NCBI] 		1500386 Uroviricota > Caudoviricetes > Sextaecvirus >
Host Homo sapiens
[NCBI] 		9606 Chordata > Mammalia > Primates > Hominidae > Homo >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009042543.1 [NCBI]
Genbank nucleotide accession
NC_024355 [NCBI]
CDS location
range 28619 -> 29455
strand +
CDS
ATGGCAGGAGATAGATGGGTAAAGGTAATTAAGCCTAATAAAAGTGATATTTTATTAACAGAAATTCCAGGACTTCATTTCCTAGAATGGAATATCCCATCTCCTGTTACTAATTCACAAGAACTAGAATTAACAGGCATTGACGGTGTTCTTCCTAGTAGGAACACCTACGGTGCTTTTGATTTAGAATTGTTGTTTTATTTTGCTGGAACAGATTCTAAAGATTTGAACTTGTTCTCTCAAAGAATGAAAAGTCTAATAAATGAGAGAGACCCTTTTTATATAGTTCATTCTGATATGCCTAGATTTAAATATGCTGTAAATTCAGCTGAAATCGAGTATGATAAAATAACAGTAGCAGATATGAATTTCACAATTAAATTTCATTGCTATAAAGGATATGCAGAATCTTTGTACAGTACAAAACATTATAGTCTGTCAGATGATAATTGGCAATTCCAAAGTGGATTAGTAACTGATGAGGAGATTAAATATACTTTTCATTCAAATGGATTTAAAGTATTTAATGGCGGAGATGATGAAATCAATCCATTATATAGACATAATTTAAAAATATATATTAATGTAGATGCTCCAAATGGTTTCACTATTAGGAACAAAACTAATGGTACGTCTTTGACTTATAAAGGTAGCCTTAAAAAGAATAGAACTTTTGTTATAAATGGAATCTATTCTATTATAGATAATAAAAGAGTTGGGAAAGATACTGATTATGGTATTATTACTTTAGAACAAGGATATAATGATATTGAAATAGATGGAACTTCAATAGGTTCAGCAAAATGTAGATTTGATTTTAACTTTATTTATAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
aba1e8c2302045d09e47aed7083688ffa76a2c7b018577050d1faf94730b5772
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9112
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50