Protein

View in Explore
Genbank accession
YP_009037307.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,72
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MEKQITRLLPSQEHEVAGVDMFSVVYQKAPIMSPDLYKVQQGITLQEVADELVHPLHHDKMQVWVNGNMVKDLSYKPTNKDVVHVCLTPQGAVVPVWALVTAAISFVAGFLLFKPSIPDFTRPEVGENKQLSRIRGARNEARAYDVIPVVLGKRQVVPAYQATPYTEIRGEDEWFKMLLCVGYGPMQIENIRIGDAPITNYEHRMAIVDHYQNTSLSALRQIWPADIVQETVNVPLAFEGTRTIVNRATVAQIDRVSVDFFYPRGIYRINESTGREQSRTVAVMHEYQDPTDNEWVIVAHSGNVPSAALPFVFKTVDGVSYIKGYTGLVNSVVRSGSTARQRRSNITYEVPNVSQAINVRSRKVSPQDTPDDTKLQDSVEWSVLRSIRNTSEQQFLNLIGDKVPPRYIDGQPVKVFRPVIIALEIKATDQLNGIIDNLNVDATMCVPSDWNVDWRDWTNKTLTPSENPADAYRWLLQGPMNASPLRNARLDLEGMLVWRNRNIQDGWKISSLIDYESTLLKELGQVAFTGRAEFGFIDGRYGVVEKIARYTPVQIFTPKNSRDFSSARTYPEVTDGIKFQFDNREKDYQKDEDIFYDLTIPTNERRGRFTGVDFWGVADRDLAYKHSRFGYYETKLRREVYKLTTDFEGLRATRGDLVRIQNDVIDVGLGSGRIKAITGNQIVIDEMEGLPSEIAETVFWNNSTILFNSDEVFWNNGDDVVVYGFQIRCSNGTISTITATYLGDNTWGTSDPIPVCADVGDLIVYGEAGRETLDCIVDNIEYQNDLVCVLTLINAANEIFELDDDFIPEFESGLTERPDYKVPTPPEFQVGLAGFDIARGLMYVSIGAVPDINEVTGYQLQVRRVSDDPEITLDWVDYEVPQNASQFVVSDVTRGDTYELRARTIGSNRLFSPFTAISTVEVPEGLPAQQIVGVSFDHTLDGTLIKWDQATDADFQYYELRTNVNFSDDVGLVTRTTSNVFNVGYLLGGQTYYVSAKTRFGVYSNTPTQINVSSPVVGTPTSLDIELIRDKTRITWQTPSSSYPIEDYDVRKNTPQTGTGLENSILLTTIKTTLFEIASEEAGEYVYWVRAKDIAGNISDYVTNQVHILSPSTPTGLVATGLFRSVQLNWDQPTYFGHDFTEIYRSLTNDIGDAVKVGDTTGNYFVDAVDGGDTFYYFIRNISVTGTPSNFSASASVTTPANADVLKQDLLNQIGYDQFDVASGVFPVRLVTELPELPNPLYPVGAIVSLAPHGELFNSTGTTWEGVIADIEDGSITTTKIADDAITTPKIFANAITAGKIAAGAVIADKIGANAVTTDKLDANAVTVEKIVAGAVTADKLDVTELSAITGNMGILTAGKIESQQVDSKNKPLVELDLDNANFSLRSAATGGRLEITDERIDVYDANNVLRVRLGRLD
Physico‐chemical
properties
protein length:1418 AA
molecular weight: 157558,94320 Da
isoelectric point:4,70686
aromaticity:0,09309
hydropathy:-0,22511

Domains

Domains [InterPro]
DC_0129
STR
4–1017
DC_0129 IPR013783 IPR013783
IPR003961
STR
822–925
IPR003961 DC_1204
IPR036116
STR
850–929
IPR036116 DC_1194
YP_009037307.1
1 1418
Architecture
STR
STR 4-1412 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009037307.1
1 1418
Domain Start End Length (AA) Confidence
N-terminal 1 674 674 0,9161
Central domain 675 1088 415 0,1100
C-terminal 1089 1418 329 0,0297
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-674
Central
675-1088
C-terminal
1089-1418

Taxonomy

  Name Taxonomy ID Lineage
Phage Nitrincola phage 1M3-16
[NCBI] 		1472912 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Nitrincola
[NCBI] 		267849 Bacteria > Proteobacteria > Gammaproteobacteria > Oceanospirillales > Oceanospirillaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009037307.1 [NCBI]
Genbank nucleotide accession
NC_024217.1 [NCBI]
CDS location
range 59390 -> 63646
strand -
CDS
ATGGAAAAGCAGATTACAAGGCTTCTACCGTCACAAGAACATGAAGTAGCAGGTGTTGATATGTTTTCGGTGGTTTATCAGAAAGCCCCGATAATGTCCCCCGATCTATATAAAGTTCAGCAAGGCATTACTCTACAAGAAGTTGCAGATGAACTTGTCCACCCGCTTCATCATGATAAGATGCAGGTGTGGGTGAATGGGAACATGGTTAAAGACCTTTCCTACAAACCTACTAACAAAGATGTGGTTCATGTCTGCTTGACTCCTCAAGGGGCTGTTGTGCCTGTATGGGCATTAGTCACTGCTGCTATTTCTTTTGTGGCAGGCTTCCTCTTATTCAAGCCAAGTATTCCTGACTTCACCCGTCCAGAAGTGGGCGAGAATAAACAACTTTCACGTATTCGTGGCGCACGTAATGAGGCTAGAGCCTATGATGTTATTCCTGTTGTATTAGGCAAGCGGCAGGTTGTTCCTGCATATCAAGCAACACCCTATACAGAGATACGTGGTGAAGATGAGTGGTTTAAGATGTTGTTGTGCGTAGGCTATGGTCCTATGCAGATTGAGAACATCCGAATTGGTGATGCCCCTATTACCAACTACGAACACCGTATGGCGATTGTGGATCATTACCAGAATACAAGTCTCTCAGCGTTACGTCAGATTTGGCCTGCTGATATTGTTCAGGAGACTGTTAACGTTCCCCTAGCCTTTGAAGGCACACGTACCATCGTAAACAGGGCTACAGTCGCCCAAATTGACCGTGTAAGCGTAGATTTCTTCTATCCTAGGGGAATATACCGTATTAACGAAAGTACTGGCAGAGAGCAATCTAGGACGGTTGCAGTGATGCACGAATACCAAGACCCAACTGATAATGAATGGGTTATTGTTGCACACTCAGGAAACGTACCTTCAGCAGCCCTACCGTTTGTATTCAAGACGGTTGATGGTGTGAGTTATATCAAAGGTTATACGGGTCTGGTTAACTCTGTTGTACGTTCTGGATCAACTGCCAGACAGCGTAGAAGCAACATTACTTATGAAGTCCCTAATGTATCACAAGCTATCAATGTTCGATCACGTAAGGTAAGCCCTCAAGACACCCCTGATGACACCAAGCTGCAAGATAGTGTAGAGTGGAGCGTACTACGTTCTATCCGAAATACATCTGAACAACAGTTCCTCAATCTCATTGGTGATAAAGTTCCACCAAGATATATTGATGGACAGCCTGTTAAAGTATTCCGTCCCGTTATCATTGCTTTAGAGATTAAGGCAACAGATCAGCTTAATGGTATTATTGATAACCTGAACGTTGATGCGACAATGTGTGTTCCGTCTGATTGGAATGTTGATTGGAGAGACTGGACGAATAAAACTCTAACTCCATCAGAGAATCCTGCTGATGCATATCGTTGGCTGCTGCAAGGTCCAATGAATGCTTCCCCATTACGTAATGCCAGACTAGATCTTGAGGGTATGCTTGTATGGCGGAATCGAAACATTCAAGATGGTTGGAAGATTTCTAGCCTTATTGATTATGAATCAACTTTATTGAAAGAGTTGGGGCAAGTTGCATTTACAGGACGTGCTGAGTTTGGGTTTATTGATGGTAGGTATGGTGTGGTTGAAAAGATTGCACGGTATACACCTGTTCAAATATTTACACCAAAGAACAGCCGAGACTTCTCTTCCGCAAGAACTTATCCAGAAGTAACAGACGGAATAAAATTTCAGTTTGATAACCGAGAGAAAGATTACCAAAAAGACGAGGATATATTCTATGACCTGACAATCCCTACAAATGAACGTAGGGGACGATTTACAGGTGTAGATTTCTGGGGCGTTGCTGATAGAGATTTAGCCTACAAACATTCACGGTTTGGTTACTATGAAACCAAGCTAAGACGTGAAGTGTATAAGCTGACGACAGACTTCGAAGGTTTACGTGCCACACGTGGTGATCTTGTACGTATTCAAAATGACGTGATTGATGTTGGATTAGGTAGTGGTCGTATTAAGGCTATTACAGGGAATCAAATAGTTATAGATGAGATGGAAGGGTTGCCTTCAGAAATCGCAGAGACTGTGTTTTGGAACAACTCAACTATACTATTTAATAGTGATGAAGTTTTTTGGAATAATGGCGACGATGTTGTGGTATATGGTTTCCAGATTCGCTGCTCCAATGGAACCATTTCCACTATTACAGCTACATACTTAGGTGATAACACATGGGGAACATCTGACCCAATTCCTGTATGTGCAGATGTTGGGGACTTAATCGTCTACGGAGAAGCTGGTAGAGAAACACTTGACTGCATCGTTGATAACATTGAATACCAAAATGACTTGGTATGTGTTCTTACCTTAATCAATGCAGCCAATGAAATCTTTGAACTTGATGACGATTTTATCCCCGAGTTTGAATCGGGATTAACAGAACGTCCTGATTATAAAGTTCCAACACCACCTGAGTTCCAAGTAGGTTTGGCTGGATTTGATATTGCCCGTGGGCTGATGTACGTGAGTATTGGTGCTGTTCCTGATATTAATGAGGTTACAGGTTATCAGTTACAAGTTAGACGTGTAAGCGATGACCCAGAGATAACATTAGATTGGGTTGATTATGAAGTGCCTCAGAACGCCTCACAATTCGTTGTGAGCGATGTTACGAGAGGAGATACCTATGAGCTAAGAGCCAGAACAATCGGCTCTAACAGGCTATTTAGCCCCTTCACGGCGATTTCTACAGTAGAGGTTCCAGAAGGATTGCCTGCACAGCAGATCGTTGGTGTCAGCTTTGATCATACTCTTGATGGCACATTGATTAAATGGGATCAGGCAACAGATGCCGATTTCCAATATTATGAGCTGCGTACCAATGTTAACTTCAGTGATGATGTTGGGTTAGTTACAAGAACAACAAGTAATGTGTTCAATGTAGGTTATTTGCTTGGTGGTCAGACGTATTATGTTTCTGCCAAGACTCGGTTTGGTGTGTACAGCAATACGCCTACACAGATCAATGTAAGTAGTCCTGTTGTTGGTACACCTACAAGTCTTGATATTGAGCTGATCAGGGATAAAACCAGAATCACTTGGCAAACACCTTCTAGCAGCTATCCTATTGAAGATTACGATGTTCGTAAGAATACACCACAAACAGGAACTGGGTTAGAGAATAGTATTCTATTGACCACAATAAAAACCACCCTGTTTGAAATAGCTTCAGAAGAAGCTGGGGAATATGTTTATTGGGTAAGGGCTAAGGATATTGCTGGTAATATTTCTGATTATGTTACAAATCAGGTGCATATACTGTCTCCCAGCACACCTACAGGATTGGTGGCAACAGGTTTGTTCAGAAGTGTTCAGTTAAATTGGGATCAACCAACATATTTCGGACACGATTTCACCGAGATATATCGCAGCCTTACGAATGATATAGGAGATGCTGTAAAGGTTGGGGATACAACTGGTAATTACTTTGTAGATGCCGTTGATGGTGGCGACACTTTTTACTACTTCATTAGGAACATCTCTGTCACAGGAACACCCAGTAATTTCTCAGCAAGTGCTTCTGTTACCACTCCTGCGAATGCAGACGTTTTGAAGCAGGATTTGCTGAACCAGATAGGTTATGACCAGTTCGATGTGGCTAGTGGAGTATTTCCTGTACGTCTTGTAACAGAACTTCCTGAATTACCTAATCCTTTATACCCTGTTGGGGCGATTGTATCCTTAGCTCCACATGGAGAGCTGTTCAATAGTACAGGCACTACGTGGGAAGGCGTTATAGCAGACATAGAAGATGGCAGTATCACCACCACAAAGATTGCGGATGATGCTATTACTACACCCAAAATATTTGCTAACGCCATCACTGCTGGTAAGATTGCAGCAGGGGCTGTCATAGCCGATAAGATTGGAGCAAATGCTGTCACAACAGATAAGCTGGATGCTAATGCTGTAACGGTTGAAAAGATTGTAGCAGGGGCTGTGACGGCTGATAAACTTGATGTTACAGAGCTGAGCGCCATTACTGGTAATATGGGGATACTGACTGCTGGTAAGATTGAGTCTCAACAAGTTGACTCAAAGAACAAACCTCTGGTAGAGTTAGATTTAGATAATGCAAATTTCTCTTTGAGGTCTGCTGCGACAGGTGGTAGGTTGGAAATAACAGATGAGAGAATTGACGTTTACGACGCTAATAATGTTTTAAGGGTTAGGTTGGGGAGGTTAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
63e9b7b5bee3e0f1e52663300a02a4033df09523fb51d580c2fbd5b15cfb44bf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7553
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of a Haloalkaliphilic Bacteriophage, Isolated from Lake Magadi in Kenya's Great Rift Valley Movassaghi,M., Lobo,N., Moulton,K.D., Mwaura,F., Rothschild,L.J. and Duboise,S.M. 2011-07 — GenBank