Protein

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Genbank accession
YP_009619056.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MAVVGVPGWIGSSAANETGQRWMSQAAGQLRLGVPCWMSQFAGRSREIIHTLGADHNFNGQWFRDRCFEAGSAPIVFNITGDLVSYSKDVPLFFMYGDTPNEYVVLNIHGGVHMWGRGGNGGYTHSGGDGNGTQGGHVIQNDIGGRLRIWNYGVIAAGGGGGGGIAYRPHSGANWQDIGGGGGRPFGGAGGGGYSGGAASYEGPGGGYDYGNAHSGAGGNAGAAGQNAWSDGGKVLKVGVGGASGHAVFGSSPTWGVVGTIYGPRV
Physico‐chemical
properties
protein length:266 AA
molecular weight: 26878,18700 Da
isoelectric point:7,12706
aromaticity:0,10902
hydropathy:-0,22970

Domains

Domains [InterPro]
IPR048291
ATT
1–42
IPR048291 IPR007932
DC_2135
STR
1–141
DC_2135
YP_009619056.1
1 266
Architecture
ATT
STR
RBD
ATT 1-42 | STR 43-141 | RBD 142-266
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf21
[NCBI] 		2024308 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009619056.1 [NCBI]
Genbank nucleotide accession
NC_042077 [NCBI]
CDS location
range 155674 -> 156474
strand +
CDS
ATGGCAGTAGTTGGTGTTCCTGGTTGGATTGGAAGTTCAGCCGCAAATGAAACAGGACAACGATGGATGAGTCAAGCGGCTGGTCAATTAAGATTGGGTGTTCCTTGCTGGATGAGTCAATTTGCAGGTCGCTCGCGAGAAATTATTCATACACTTGGCGCAGACCATAACTTCAATGGTCAGTGGTTCCGTGATAGATGTTTTGAGGCGGGTAGTGCACCTATAGTGTTTAATATCACTGGAGATTTAGTATCATATTCTAAAGATGTACCGCTTTTCTTTATGTATGGTGACACTCCTAACGAATACGTTGTCCTTAATATTCATGGTGGTGTCCATATGTGGGGTCGAGGTGGTAATGGTGGATACACTCACTCAGGTGGAGATGGTAACGGTACACAAGGCGGTCATGTTATTCAAAATGATATCGGTGGACGGCTTCGTATTTGGAACTACGGTGTTATAGCTGCTGGCGGTGGTGGCGGTGGTGGTATTGCATATCGTCCACACTCAGGGGCAAACTGGCAAGATATCGGTGGCGGTGGCGGTCGACCTTTCGGTGGTGCAGGTGGTGGTGGTTATTCCGGTGGCGCTGCTTCTTATGAAGGTCCGGGTGGTGGTTATGACTATGGTAACGCACACTCCGGAGCTGGTGGTAATGCTGGTGCTGCTGGTCAGAATGCATGGTCTGACGGCGGTAAAGTTCTTAAAGTTGGTGTTGGTGGTGCGTCTGGTCATGCAGTGTTTGGATCTTCTCCAACTTGGGGTGTTGTTGGAACAATTTACGGACCAAGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5d98f83a7855b135846cf1f97d6bca686815ceef60837fb9d5bc7424b103dc2f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8553
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank