Protein

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Genbank accession
YP_010678855.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSYTITKSNGNIIAIPDGTISNVYSTSLVGRITPAYGQSLAQSTIRTLENFANNTSPRGAIKGQLWFDTRTNVMKVWIGNDPVNSTDNTSANPNHASWKSLISTVDSTIIPATNTVDLGAAANRFRVGYFSTVNTTNLVAGTTQLGATTIGGNVLPSTTSQYSIGSASLTFADIYARRFLATQEIVFSRSNGNITLGFIPLSDTAVGMKNTTDTLGSASSRIAGIYASGMYANSLSVGSGQPGYGVITNLIPSTTNAFTLGSDTNRYSKIYGMELYARDKIIPGVPDTTTIGDVNNAFGLSYINEITTSKINARTTTSSIGSQTSPFQNIYGTNLIGTSTSSKYADLAERYEADGELDTGTVVKLGGSKEITMTTLDADTEVFGVISTSAGIMMNADAGTDDTHPFVALAGRVPVKVIGPISKGDRLVASDVPGVARRITMSELQQLGPMGVYSIIGRAISSKSTSDVELVLCAIGSK
Physico‐chemical
properties
protein length:478 AA
molecular weight: 50162,63570 Da
isoelectric point:6,18717
aromaticity:0,06904
hydropathy:-0,03389

Domains

Domains [InterPro]
DC_0320
STR
1–476
DC_0320
G3DSA:2.40.300.10
RBD
344–457
G3DSA:2.40.300.10
YP_010678855.1
1 478
Architecture
STR
STR 1-476 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010678855.1
1 478
Domain Start End Length (AA) Confidence
N-terminal 1 243 243 0,2687
Central domain 244 442 200 0,2968
C-terminal 443 478 35 0,9767
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-243
Central
244-442
C-terminal
443-478

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_PA5oct
[NCBI] 		2163605 Uroviricota > Caudoviricetes > Arenbergviridae > Wroclawvirus PA5oct >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010678855.1 [NCBI]
Genbank nucleotide accession
NC_071039 [NCBI]
CDS location
range 45682 -> 47118
strand -
CDS
ATGTCATATACAATTACAAAGTCAAACGGAAATATAATAGCAATACCTGATGGTACTATATCTAACGTATATTCTACTAGCTTAGTTGGTAGAATAACACCTGCATATGGACAATCTTTAGCACAGTCTACAATAAGAACATTAGAAAACTTTGCAAATAATACATCTCCTCGGGGTGCAATAAAAGGGCAACTTTGGTTTGATACTAGAACTAATGTAATGAAAGTGTGGATAGGAAACGATCCTGTCAATTCTACAGATAACACTAGTGCAAACCCAAATCATGCATCGTGGAAATCATTAATAAGTACAGTAGATTCTACAATAATTCCTGCAACAAACACAGTAGATTTAGGCGCTGCCGCAAATAGATTCAGAGTCGGTTATTTTAGTACAGTTAATACGACTAATTTAGTTGCAGGAACAACCCAATTAGGTGCTACTACTATAGGCGGTAATGTACTACCTAGTACAACTTCTCAGTATTCTATAGGTTCGGCAAGTTTAACATTTGCAGATATATATGCAAGAAGATTTCTTGCAACACAAGAAATTGTATTTTCTAGATCAAACGGTAATATTACTTTAGGTTTTATACCTCTTAGTGATACAGCAGTTGGGATGAAAAACACAACTGATACTCTAGGTAGTGCTTCGAGTAGAATTGCAGGTATATATGCAAGCGGGATGTATGCTAATAGTTTATCGGTCGGATCCGGGCAGCCGGGTTATGGTGTTATTACTAACTTAATACCTAGCACAACTAATGCGTTTACTTTAGGTTCAGATACAAATAGATATTCTAAAATATACGGTATGGAATTATATGCAAGAGATAAGATAATTCCTGGTGTACCTGATACTACCACAATCGGTGATGTTAATAATGCATTTGGCCTATCATACATAAACGAAATAACAACATCTAAAATAAATGCTAGAACAACTACTTCTTCTATAGGAAGTCAAACTAGTCCTTTCCAAAATATTTATGGAACTAATTTAATAGGTACGTCTACATCAAGTAAATATGCAGATCTTGCAGAAAGATATGAAGCTGATGGAGAATTAGATACAGGAACTGTAGTTAAATTGGGTGGTTCTAAAGAAATAACAATGACAACACTCGATGCAGATACAGAAGTATTCGGTGTAATAAGTACAAGTGCAGGCATAATGATGAATGCCGACGCAGGAACAGATGACACTCATCCGTTTGTCGCATTAGCAGGAAGAGTACCCGTGAAAGTAATAGGACCCATATCTAAGGGCGATAGATTAGTTGCAAGTGATGTTCCTGGTGTTGCCCGCAGAATAACAATGTCAGAATTACAACAGTTAGGTCCTATGGGTGTATATAGTATTATAGGACGTGCTATTAGTTCTAAATCAACATCGGATGTAGAATTAGTTTTATGTGCAATAGGCTCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7f6b55963ccb575630b602ad9a904801897ebb780eb9c0c9ff9ac8eecabfadfa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7365
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B.G., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., van Noort,V., Drulis-Kawa,Z. and Lavigne,R. 2019 — GenBank
Genomics, Transcriptomics, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., Kawa,Z. and Lavigne,R. 2019-06-22 — GenBank