Protein

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UniProt accession
A0AA50AEG3 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALTKLTKPRARWATFKLSVADAVLRSLYDKILDNGVSGKDFGAVGDGIADDTRALELLFSYGGRVKLHSGTYRVSRRINLSNGTKVIGEGHNSTFILAADKVSGDLTTMIGTSGTSSNLVTDAGIHGVTLDANFKFQSCAFMSWMNSCSFEDIKVRNPLKQLEENYRGGFLVLKSSFVHINKFRAYGIYQHDDISSSEYQSLSFTDSHHCWVKDSYVTQSDKAYHVGGESSFIHFSEVEAVNTRNNGLYLIEDVSNITFNGFLLKATQEGIVLNADGKDRGIVINDGTISESTSRALALRSGEGYQLSNISVYKCYSGMAQSTNTEYSGVKNLQATNITIKGCTTERPLYLARNKNISISNLKILDAPTFIGNDVCRIAEDCDDISITDLYIDTRSNPLLYGIYIAPEAGGSPNITVDGYEFKGITRDFVTQENSADTLFARGKLGQYNGTVRVIKDEGGSIGILSQDASVGAGQSVGEFYHEQSDSSGLGAGKVFSVKTSSLTSVGSTYQTEIYGRDTELVSVIKGGTMTIVLPTSPTGLPSGAIWNDSGTIRVVG
Physico‐chemical
properties
protein length:558 AA
molecular weight: 60329,77000 Da
isoelectric point:5,75935
aromaticity:0,08781
hydropathy:-0,19319

Domains

Domains [InterPro]
DC_1082
ATT
10–35
DC_1082 IPR012334 DC_1723
IPR012334
STR
20–453
IPR012334
IPR011050
STR
36–317
IPR011050 IPR011050
IPR024535
ENZ
40–271
IPR024535
A0AA50AEG3
1 558
Architecture
ATT
STR
RBD
ATT 10-35 | STR 36-455 | RBD 456-558
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0AA50AEG3
1 558
Domain Start End Length (AA) Confidence
N-terminal 1 53 53 0,9694
Central domain 54 448 396 0,9894
C-terminal 449 558 109 0,9043
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-53
Central
54-448
C-terminal
449-558

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_ValA_R15Z
[NCBI] 		3044218 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0098994 symbiont entry into host cell via disruption of host cell envelope Biological Process IEA:UniProtKB-KW (UniProt)
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
3899f470781df7dd90955bd0ca6a35f8270fbd2836aa2df35df4b93fe470c00c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7963
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50