Protein

View in Explore
Genbank accession
QVD48963.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTPKTVRTYALDGTKKDFTIPFEYLARKFVVVTLIGATRRELILNTEYRFTTNTTITTTKAWGPADNFDLIEIRRLTSATERLVDFADGSILRAYDLNISQVQSLHIAEEARDLTADTIGVNNDGDLDARARKIVNLADGVNDGDAVNLRQQKQWAGSALNSATASAASAAASEASRQASLAQANASATSAVQSSQFKDQSFYFRNEAEGFRNQAAASRDSASASETNASQWAAKPEDQVVSGSLYSSYHYSRKSAASASASATSAGNAANSVTQAANQVTLATAQADRAKTEADKLGNFNGLAGALDSVSGTTVTWKGNQISKTGVFISRSDSEANFTFQKADGSDPIRLVRTADRAVHLYGDASGDGDRIVLYSTGVTIPKTLTISGTTFTQAISTSGNIILTGSVLAAGNVQAKGGNLQVYAAASNANSHVWFYNSDGATRGILYGGTDNAMRLQAGNSVCATFTADGGSNFNNINANAIGITRGGVQSIMYEGSGISAGSYGQCQLQLQGTGGGVAKLGFHNAGRVALTLWLTDNNELQIMKNSGANTEIIHNGNLGAWNVSAMSAEVIGQLSFLQNVSGSNLDSNSQLAGGNLRKSTHNNVSGAPGGTWRSMGWSNNGGVSIWQRVA
Physico‐chemical
properties
protein length:634 AA
molecular weight: 66449,27430 Da
isoelectric point:7,06812
aromaticity:0,07098
hydropathy:-0,26940

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604
DC_0657
STR
1–629
DC_0657
QVD48963.1
1 634
Architecture
ATT
STR
ATT 1-131 | STR 132-629 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVD48963.1
1 634
Domain Start End Length (AA) Confidence
N-terminal 1 188 188 0,9625
Central domain 189 387 200 0,3659
C-terminal 388 634 246 0,9168
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-188
Central
189-387
C-terminal
388-634

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_Pci_PCMW57
[NCBI] 		2834275 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas cichorii
[NCBI] 		36746 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVD48963.1 [NCBI]
Genbank nucleotide accession
MW812345.1 [NCBI]
CDS location
range 34423 -> 36327
strand +
CDS
ATGGCTACTACACCAAAGACGGTGCGGACCTACGCTCTCGATGGCACCAAGAAAGACTTCACGATCCCCTTCGAGTATCTCGCTCGGAAGTTCGTTGTGGTCACCTTGATCGGTGCAACTCGACGTGAGCTGATCCTGAACACCGAGTACCGCTTCACTACCAACACGACCATCACCACGACCAAGGCATGGGGACCGGCTGACAACTTCGACCTGATCGAGATTCGCCGACTGACCTCTGCAACTGAGCGTCTGGTGGACTTCGCTGATGGTTCGATCCTTCGGGCCTACGACCTGAACATCTCGCAGGTTCAATCCCTGCACATCGCTGAGGAAGCCCGTGACCTGACCGCTGACACAATCGGCGTGAACAACGATGGTGACCTCGATGCCCGTGCCCGTAAGATCGTCAACCTCGCCGATGGCGTGAACGATGGTGATGCGGTCAACCTGCGCCAGCAGAAACAATGGGCAGGCTCTGCGTTGAACTCTGCGACCGCCAGTGCGGCCAGTGCGGCTGCCTCTGAGGCGTCCCGTCAGGCTTCCTTGGCTCAGGCCAATGCGAGCGCTACATCTGCTGTTCAATCCTCTCAGTTCAAGGATCAGTCCTTCTACTTCAGGAATGAGGCCGAGGGTTTCCGCAACCAAGCTGCTGCATCTCGGGACTCTGCTTCCGCAAGCGAGACCAATGCTTCCCAATGGGCTGCCAAACCGGAAGACCAAGTGGTCTCTGGGAGTCTCTATTCGTCCTACCACTACAGCCGAAAGAGTGCTGCGAGTGCCTCTGCGAGTGCAACCTCTGCGGGCAACGCTGCGAACTCTGTGACCCAAGCTGCCAATCAGGTAACTCTGGCGACCGCTCAGGCTGACCGTGCGAAGACCGAGGCTGACAAGCTGGGCAACTTCAACGGTCTCGCTGGAGCTTTGGATTCTGTATCGGGAACCACTGTGACGTGGAAAGGTAACCAGATCAGCAAGACTGGGGTATTCATCTCCCGGTCTGACTCTGAGGCGAACTTCACGTTCCAGAAGGCTGACGGCTCCGATCCTATCCGTCTTGTCCGTACAGCAGACCGCGCAGTTCATCTCTATGGTGACGCATCGGGTGACGGTGATCGAATCGTCCTGTACTCCACTGGCGTGACGATTCCGAAGACCCTGACTATCAGCGGCACGACGTTCACTCAGGCTATCTCCACCTCTGGAAATATCATCCTGACAGGTAGCGTACTTGCGGCTGGCAACGTGCAGGCCAAAGGCGGCAACCTTCAGGTCTACGCTGCTGCTTCCAACGCAAACTCCCACGTCTGGTTCTACAACTCTGATGGGGCGACCCGAGGGATTCTCTACGGTGGTACTGACAACGCAATGCGGCTCCAAGCGGGCAACAGTGTATGTGCGACGTTTACTGCTGATGGTGGCTCGAACTTCAACAACATCAACGCAAACGCCATCGGAATCACCCGTGGTGGCGTCCAGTCGATCATGTACGAAGGTTCTGGCATCTCTGCTGGCTCCTACGGCCAATGCCAGTTGCAGCTCCAAGGCACTGGTGGTGGTGTGGCCAAGCTGGGCTTCCACAACGCTGGCCGAGTGGCTCTGACCCTTTGGCTGACCGACAACAACGAACTCCAGATCATGAAGAACTCTGGGGCGAACACCGAGATCATCCACAACGGCAACCTCGGGGCATGGAACGTGTCCGCGATGTCCGCTGAAGTGATTGGCCAACTGTCGTTCCTTCAGAACGTCTCTGGGTCGAACCTCGATTCCAACTCGCAGCTCGCTGGCGGCAACCTTCGGAAGTCCACTCACAACAACGTGAGCGGGGCACCGGGTGGTACTTGGCGCTCTATGGGCTGGTCCAACAACGGCGGCGTTTCCATCTGGCAACGTGTCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e1a3262f961818c827233c81f0c79a538a683acacb391cc2a895bbbf5a194f49
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6655
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a virulent bacteriophage specific for Pseudomonas cichorii Alves,M.K., de Souza,W.V., Novello,J.C.L., Sillankorva,S., Henriques,J.A.P. and Ely,M.R. 2023-06-16 — GenBank