Protein

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Genbank accession
YP_009784968.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MYYSLMRESKVIVEYDGRAFHFDALSNYDVQTSYEEFKTLRRTIHRRTNYADSVINAQTPSSISLAINFSNTLTEANFFEWLGFDRKGNTFLLPLYSNNIEPIMFNIYIVNKDNNCVYFENCYVSTVDFSLDKNIPILNVGIESGKFSEVSTYREAASIIQGEAMSYSPVIVSTNGNILPGLISASLSFQQQCSWREDKSVFDINKIYNNKRAYVNEMNASATISLYYLKRFAGDMVYNIEPETDVPLNIRNNNISIDFPLARISKRLNFSDVYKVEWDIIPTASSDPVRIDFFGEIKND
Physico‐chemical
properties
protein length:300 AA
molecular weight: 34483,38320 Da
isoelectric point:4,98611
aromaticity:0,13333
hydropathy:-0,25167

Domains

Domains [InterPro]
IPR056389
ATT
1–298
IPR056389
YP_009784968.1
1 300
Architecture
ATT
ATT 1-298 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009784968.1
1 300
Domain Start End Length (AA) Confidence
N-terminal 1 287 287 0,6183
Central domain 288 289 3 0,7747
C-terminal 290 300 10 0,7478
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-287
Central
288-289
C-terminal
290-300

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage DT571/2
[NCBI] 		1567007 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus DT5712
Host Escherichia coli HS
[NCBI] 		331112 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009784968.1 [NCBI]
Genbank nucleotide accession
NC_047749 [NCBI]
CDS location
range 86420 -> 87322
strand -
CDS
ATGTACTACTCTCTAATGCGAGAGTCAAAGGTTATAGTTGAGTATGATGGTAGGGCATTTCATTTTGATGCCCTATCAAACTACGATGTACAAACCTCCTACGAAGAATTTAAGACTCTTCGTAGGACTATTCATCGTAGAACTAACTATGCAGACTCTGTTATAAATGCTCAAACTCCTTCTTCTATCTCTCTAGCAATAAATTTTAGTAATACACTTACTGAAGCTAACTTTTTTGAATGGCTAGGTTTTGATAGAAAAGGTAATACTTTCTTACTACCACTATATAGTAACAATATTGAACCTATTATGTTTAATATCTATATAGTAAATAAAGATAATAACTGTGTATATTTTGAGAACTGCTATGTATCTACTGTAGATTTTTCTTTGGATAAGAATATACCAATTCTTAACGTTGGTATCGAATCAGGGAAATTTTCCGAAGTATCTACATATAGAGAAGCAGCTTCTATTATACAGGGTGAAGCAATGTCCTATAGCCCGGTAATAGTTTCTACTAATGGTAACATTTTACCTGGTCTTATTTCCGCTTCTTTATCTTTTCAACAGCAATGCTCCTGGAGAGAAGATAAGAGTGTTTTTGATATAAATAAAATCTATAATAATAAAAGAGCCTATGTAAATGAAATGAATGCTTCAGCAACCATTTCCCTATACTACTTAAAACGTTTTGCTGGAGATATGGTTTACAATATTGAACCAGAAACCGATGTACCTTTAAATATAAGAAATAATAATATTTCTATAGATTTTCCTTTAGCACGTATTTCAAAACGCCTAAATTTCTCAGATGTGTATAAAGTTGAGTGGGATATTATACCTACTGCTTCTTCAGACCCTGTGAGAATAGATTTCTTTGGAGAAATTAAAAATGATTAA

Genome Context

Genome Context

Tertiary structure

1 / 2
PDB ID
Source
Method
Resolution
Oligomeric State