Protein

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Genbank accession
XOD43430.1 [GenBank]
Protein name
upper tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MLINVLNLNDSQDGNRIKQGDLSHMRYILSDTNNDDLKLDGLPAKVFLTDSTGVKYIYDTTVRQYDNAYVCDVVINQIIPANTYSLEIWVDNKYVFPSDNKAKIQVTESVIGRQLINTQNHDLWQEMIEYGVKNGLIKNQTESEENFVIGENAPNDTTKIWIDTTGGNE
Physico‐chemical
properties
protein length:169 AA
molecular weight: 19221,16970 Da
isoelectric point:4,50031
aromaticity:0,08284
hydropathy:-0,51065

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SepS_E72m5
[NCBI] 		3398617 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD43430.1 [NCBI]
Genbank nucleotide accession
PV036961.1 [NCBI]
CDS location
range 22646 -> 23155
strand +
CDS
ATGTTAATAAATGTACTTAATTTAAATGACTCACAAGACGGTAATCGTATTAAACAAGGTGACTTATCACACATGCGATACATCTTATCTGACACTAACAACGATGATTTAAAACTAGACGGATTACCTGCAAAAGTTTTTCTCACTGACAGTACAGGTGTCAAATATATCTACGACACTACAGTTAGGCAATATGACAATGCCTATGTGTGTGATGTTGTAATCAATCAAATTATCCCTGCAAACACGTATTCATTAGAAATATGGGTGGATAACAAGTATGTATTCCCGTCCGACAATAAAGCGAAAATTCAAGTAACAGAGAGTGTGATTGGTAGGCAATTGATCAATACACAAAATCATGATTTATGGCAAGAAATGATTGAATACGGTGTAAAAAACGGATTAATTAAGAATCAAACTGAAAGCGAAGAAAATTTTGTTATTGGAGAGAACGCCCCTAATGACACAACTAAAATTTGGATTGATACTACTGGAGGTAATGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
233de68d40c01c26a102f27d70446dfe320bb9b5e784b5f11dac6b0dd5c2952b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7324
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Virion content unpacked by long-read sequencing: Stress-induced changes in transmitted staphylococcal mobilome due to phage-satellite interactions Botka,T., Smetanova,S., Vinco,A., Kucerova,E., Rovnakova,K., Sivakova,A., Maslanova,I. and Pantucek,R. — — GenBank