Protein

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Genbank accession
YP_006560836.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSAGTLTLTNDTDAVTGSGTAFTAELAAGDFIVVTVGGIPYTLPVKAVNNNTSLTLVSVYTGPTQSGAAWSAVPRVALNMVTAALVAQSAEALRGLNYDKQNWQSIFSGTGNIAVKLPDGSAWNGPAWNGITTELNKKANASDLGSAASKNTGLNSGDIMTVGSFGIGAKDGAYAFEVNDFGAVQVAMSGSGLRTYRNNGFLGDGDQSIAQYSPTIWVGTGDTWASLSLPYSPAGKIAVASGSESAGRMVVRLLWDNSNTVVDGNGFIKQASPVVRIFSDGGYETNDESEGVVVTRIQTGEYLIEGCTGLNADAAWGGIDGGFEIPVDRNKLARIWIDYEVNADGSVLVRTYHRVHPSAPPFAQNRIGNTDISGMFTETVADGEPVDIPADSFVSVRVEMPENSIWNKKQEATRIAMEEARMKEWRTDGNNV
Physico‐chemical
properties
protein length:432 AA
molecular weight: 45518,01040 Da
isoelectric point:4,60017
aromaticity:0,08102
hydropathy:-0,14306

Domains

Domains [InterPro]
DC_0709
STR
1–429
DC_0709
IPR058008
RBD
259–402
IPR058008
YP_006560836.1
1 432
Architecture
STR
STR 1-429 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SosS_Oslo
[NCBI] 		1168549 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006560836.1 [NCBI]
Genbank nucleotide accession
NC_018279 [NCBI]
CDS location
range 22712 -> 24010
strand +
CDS
ATGTCAGCAGGAACCTTAACTCTTACCAATGACACAGATGCTGTTACTGGCAGCGGCACAGCGTTTACAGCAGAACTTGCTGCTGGCGATTTTATTGTCGTAACTGTCGGCGGCATCCCTTATACACTTCCGGTTAAAGCAGTAAATAACAATACATCACTGACGCTGGTTAGTGTTTACACAGGCCCGACACAATCCGGCGCTGCGTGGTCTGCCGTGCCTCGTGTTGCTTTGAACATGGTCACGGCTGCCTTGGTGGCTCAAAGCGCTGAGGCATTGCGAGGACTGAATTACGATAAGCAGAACTGGCAAAGCATTTTTAGTGGAACCGGCAACATAGCAGTCAAGTTACCTGATGGTTCTGCGTGGAACGGCCCTGCGTGGAATGGCATTACGACAGAACTAAATAAAAAGGCCAACGCCAGTGATCTCGGTTCTGCTGCTTCGAAAAACACTGGGTTAAATTCCGGTGACATAATGACGGTTGGGTCTTTTGGTATTGGTGCCAAAGATGGTGCCTATGCATTTGAAGTCAATGACTTTGGTGCAGTTCAGGTCGCAATGTCAGGTAGCGGACTCAGGACATATCGAAATAATGGTTTTCTTGGCGACGGTGATCAAAGTATTGCGCAATACAGCCCGACCATATGGGTTGGGACCGGGGATACCTGGGCATCATTATCGTTGCCGTATAGCCCTGCGGGGAAAATTGCGGTGGCATCAGGTAGTGAGTCTGCGGGCCGTATGGTAGTGAGGTTGCTATGGGATAATAGCAACACTGTCGTTGATGGTAATGGATTTATTAAACAGGCATCGCCGGTTGTCAGAATTTTCTCTGATGGAGGTTATGAAACGAATGATGAATCAGAAGGTGTGGTCGTAACCAGGATACAGACTGGCGAGTACCTTATCGAGGGGTGCACTGGCCTTAATGCAGATGCAGCATGGGGAGGGATTGACGGTGGATTTGAGATCCCCGTAGACCGAAATAAACTTGCTCGCATCTGGATCGATTATGAGGTCAATGCTGACGGTTCGGTACTGGTCAGAACGTATCACCGGGTTCATCCCTCAGCACCTCCGTTTGCTCAGAACAGAATAGGTAATACTGATATTAGCGGCATGTTTACTGAAACTGTTGCTGATGGTGAACCAGTCGACATTCCTGCAGATTCTTTTGTGTCTGTACGTGTGGAAATGCCGGAAAACAGCATCTGGAATAAGAAACAAGAGGCTACTCGTATCGCTATGGAGGAAGCCAGGATGAAAGAATGGCGGACAGATGGTAATAATGTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
6119d06c675d819f368eed7c28daf57a99584966abd2ce8b5a33c4c98e2f59d2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7885
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of two new Salmonella bacteriophages: vB_SosS_Oslo and vB_SemP_Emek Ho,N., Lingohr,E.J., Villegas,A., Cole,L. and Kropinski,A.M. 2012 — GenBank