Protein

View in Explore
Genbank accession
UTC25198.1 [GenBank]
Protein name
putative collagen triple helix repeat-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAQYEDKVVEVLVTLPEPSASTSGGSGAPFTGIETQDTVSTTLIGDGTQSSPLQANINISRRSGNRLQVVSTSSEQGLYVAGSDTKVSAKDGNTVTYISAQDAANAGNPALEGVYSDPVNVSTTSPKETLEIKADPTGKAKTQIDVIVDPDSMNALKVGTAGLSVPVSVAQDNTLEIRQGALYVRPQETKISQDPNNKIQVKSDGIYVDTVKGDKGDTGATGPAGPQGPQGDPGPQGPQGQQGDKGDKGDTGDVGPAGATGPAGAQGARGPEGPKGPAGIGINVIDQLDEVSQLPAVAEMELGDTYVIGQNFWTVVNENNVKQWKDIGNFAGPEGLSAYEVAEGAGFVGTVDEWLESLKGADGIGLQILGSFPDPSYLPDEGNKPGDCYIIQDMMYVWAGDEDGWQTVGQIGPEGKSAYQVWLANGHTGSQVDFLNYLIGPQGPKGDKGDKGDTGADGTNANAINLLGKVADEASLPAGADAGDAYLVGTSVWVSTGNDNWENLGAFQGPKGDQGDVGPAGPKGDKGDAGDVGKDNYALAAENGFQGSLSDYLASLKGAKGDTGPQGPRGLTGPQGAKGEVGEGLAILGSKADPSELPSNPVTGDAWLIGEDLYIFNGTAWENAGPVRGPKGDTGATGPAGAKGDKGDQGEKGDKGDQGDVGPAGPEGPQGTGLTPKGSVPTVADLPDQDNTKGDFWAVEEDGNGYAWDGLQWVVTGLTRGPQGPKGDKGDKGDTGDQGPQGVKGDTGATGPQGPQGDIGPGVEIMGKLNSTSELPSTGQLGQGYLIDGDFWGWTGSAYENLGRIQGPVGPTGPTGDPGPTGPQGVKGDKGDQGSLWIVFDHDPGPADGRVGDYFLNSSTLQFFRKTNATTWAPMGYMGGGNVYDSPKDGKQYARIDGDWELVEVLEAPQDNGYYVRANGAWQKLDRYDLRVMSATGALDASVSNVFTVDGTTSKAITISNLPAGRAMTVVVKFLGKGGSMTWPSPMAWSNGTQPALGTTRTILTFFWDGTDLTGVQAMTVD
Physico‐chemical
properties
protein length:1022 AA
molecular weight: 104897,49840 Da
isoelectric point:4,27369
aromaticity:0,06654
hydropathy:-0,51869

Domains

Domains [InterPro]
DC_1512
ATT
1–89
DC_1512 DC_0915 DC_1340 DC_1593
IPR008160
STR
219–274
IPR008160 G3DSA:1.20.5.320 IPR008160 G3DSA:6.20.230.10
IPR050149
Unmapped
508–847
IPR050149
UTC25198.1
1 1022
Architecture
ATT
ATT
STR
ATT
STR
ATT 1-89 | ATT 118-384 | STR 424-880 | ATT 881-906 | STR 907-1022
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage vB_PcaM_P7_Pc
[NCBI] 		2961681 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium carotovorum
[NCBI] 		554 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UTC25198.1 [NCBI]
Genbank nucleotide accession
ON712643 [NCBI]
CDS location
range 7059 -> 10127
strand +
CDS
ATGGCACAATATGAAGATAAGGTCGTGGAAGTTCTGGTGACTCTCCCGGAACCGTCTGCGAGCACCTCTGGTGGTTCTGGTGCGCCTTTCACGGGCATCGAAACCCAAGACACCGTATCCACCACGCTGATTGGTGATGGTACTCAATCCTCCCCTCTGCAAGCAAACATCAACATCTCCCGTCGTTCAGGAAACCGCCTCCAAGTGGTGAGCACCTCCAGTGAGCAGGGTCTGTATGTTGCTGGCTCCGACACCAAGGTGTCTGCTAAGGATGGGAACACCGTAACTTACATCTCCGCCCAAGATGCTGCTAACGCTGGCAACCCGGCCCTGGAAGGTGTATACTCTGATCCGGTGAACGTGTCAACCACGTCACCGAAGGAGACTCTGGAAATCAAGGCTGATCCTACCGGGAAAGCCAAGACCCAAATCGACGTGATCGTTGATCCAGATTCCATGAACGCCCTGAAGGTAGGCACTGCTGGCCTGAGCGTTCCTGTTTCTGTGGCTCAAGACAACACGCTGGAAATCCGCCAGGGTGCTCTGTACGTTCGCCCGCAAGAGACTAAAATCTCCCAAGACCCAAACAACAAGATTCAAGTCAAGTCTGACGGGATTTACGTTGACACTGTAAAAGGTGATAAAGGGGATACCGGGGCAACTGGCCCGGCAGGCCCTCAAGGCCCACAGGGAGACCCGGGTCCTCAAGGTCCGCAAGGCCAGCAGGGCGATAAGGGCGATAAAGGTGACACCGGAGACGTAGGACCAGCGGGGGCAACTGGCCCGGCAGGGGCACAGGGTGCTCGTGGCCCAGAAGGTCCGAAAGGCCCGGCTGGTATTGGTATCAACGTCATCGATCAGCTTGACGAAGTTTCTCAGCTTCCGGCTGTTGCAGAAATGGAACTGGGTGACACTTACGTTATTGGACAGAATTTCTGGACCGTTGTCAACGAAAACAACGTGAAGCAGTGGAAGGACATCGGTAACTTCGCGGGGCCTGAAGGTCTGTCTGCTTATGAAGTTGCAGAAGGAGCGGGCTTCGTTGGTACTGTTGATGAGTGGCTGGAATCCCTGAAAGGGGCTGACGGTATCGGTCTGCAAATTCTTGGTTCCTTCCCTGACCCGTCCTATCTGCCTGATGAAGGTAACAAGCCGGGTGACTGCTACATCATCCAAGACATGATGTATGTGTGGGCAGGTGATGAAGATGGATGGCAGACTGTAGGTCAGATTGGCCCAGAGGGTAAATCTGCGTACCAGGTATGGCTGGCTAACGGTCACACCGGATCTCAGGTTGACTTCCTGAACTACCTGATTGGCCCACAAGGACCGAAAGGTGATAAAGGCGACAAAGGTGATACGGGTGCTGACGGTACTAACGCCAACGCCATCAACCTCTTGGGTAAAGTCGCAGACGAAGCGAGCCTCCCGGCGGGCGCGGATGCAGGCGATGCCTACCTGGTCGGAACTAGCGTTTGGGTATCCACTGGGAATGACAACTGGGAAAACCTCGGTGCCTTCCAAGGCCCTAAAGGTGATCAGGGGGATGTAGGCCCTGCTGGCCCGAAAGGCGACAAGGGAGACGCAGGTGACGTAGGCAAAGACAACTACGCATTGGCGGCAGAGAACGGGTTCCAAGGTTCCCTGAGCGACTACCTGGCATCTCTCAAAGGTGCGAAGGGCGACACTGGTCCTCAGGGTCCACGTGGTCTTACTGGCCCGCAGGGTGCGAAAGGGGAAGTAGGGGAAGGTCTCGCGATCCTCGGATCAAAAGCTGATCCTTCAGAACTGCCTTCCAATCCGGTAACTGGTGACGCATGGCTGATCGGAGAAGACCTATACATCTTCAACGGCACTGCTTGGGAGAATGCAGGCCCTGTCCGTGGTCCGAAAGGTGACACCGGAGCCACTGGCCCGGCTGGAGCTAAGGGTGACAAGGGTGACCAAGGCGAGAAAGGCGACAAGGGTGACCAAGGTGATGTCGGCCCGGCTGGCCCAGAAGGCCCGCAGGGGACTGGTCTGACGCCGAAAGGTTCTGTTCCTACAGTAGCAGATCTTCCTGACCAAGACAACACCAAAGGCGACTTCTGGGCTGTAGAGGAAGATGGCAATGGTTACGCTTGGGATGGGTTGCAGTGGGTTGTTACTGGCCTGACTCGCGGACCGCAAGGACCGAAAGGTGATAAAGGCGACAAAGGTGATACCGGAGACCAAGGCCCACAAGGTGTGAAAGGTGACACTGGTGCTACAGGCCCTCAAGGCCCGCAAGGTGACATCGGTCCGGGCGTTGAGATCATGGGTAAACTCAACAGCACTTCAGAACTGCCTTCAACCGGGCAACTGGGTCAGGGTTACCTGATTGACGGCGACTTCTGGGGATGGACTGGCTCTGCCTACGAAAACCTTGGACGTATCCAAGGCCCGGTTGGTCCTACTGGTCCTACTGGTGACCCAGGCCCTACAGGCCCACAGGGTGTCAAGGGTGATAAGGGTGATCAAGGTTCCTTGTGGATCGTGTTCGACCATGACCCGGGTCCTGCTGATGGTCGTGTAGGTGACTACTTCCTGAACTCCTCAACGTTGCAGTTCTTCCGCAAGACGAACGCAACCACTTGGGCACCGATGGGGTACATGGGTGGCGGTAACGTTTACGATTCCCCGAAAGACGGCAAGCAGTACGCTCGTATCGACGGGGATTGGGAACTGGTCGAAGTTCTGGAAGCGCCTCAAGACAACGGCTACTACGTCCGTGCGAACGGTGCGTGGCAGAAACTGGATCGCTACGACCTGCGTGTCATGTCCGCAACTGGCGCACTGGATGCTTCTGTATCCAACGTGTTCACCGTTGACGGAACCACGTCTAAGGCAATCACCATCTCCAACCTGCCAGCGGGTCGTGCGATGACTGTGGTTGTTAAGTTCCTCGGTAAAGGTGGGTCCATGACTTGGCCTTCTCCGATGGCATGGTCTAACGGCACCCAGCCAGCACTTGGTACTACCCGTACCATCCTGACGTTCTTCTGGGACGGCACGGACCTGACTGGTGTTCAGGCAATGACTGTAGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
28eba28883e3ef9cfac8dac86f4c34011ea5e008c1547be6d0f1b6e04d8680da
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3090
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pectobacterium carotovorum phage vB_PcaM_P7_Pc is a new member of the genus Certrevirus Naligama,K.N. and Halmillawewa,A.P. 2022 36346243 GenBank