Protein

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Genbank accession
YP_010246494.1 [GenBank]
Protein name
exonuclease
RBP type
TSP
Evidence DepoScope
Probability 0,93
Protein sequence
MGVLAALLSQPTAPEPAPARETITVDQSGNYSKSFYTDPHDDFYMPANRKELHNVLDVPDGYAITGDVTYRNRELVNGGSVTAFTYKFREVPKPLDIDDLAERVAKAPPANPIHGAGPHWFVFQAGDLQLGKIARDGSTEQIVETYMQSVRAAVVEYESLSDEFGVSGVQLSFPGDCMEGVVSQGGRNIWLTQETITEQTRIFRRLLLWTVDQFAPIANHVYVDVVNGNHDEANRQVNTKPGDGWATECAIALSDAMELNPEAYGHVEVRVPDSWCGHMTVPVGDSLVTVAHGHQWRRGKGMGWWAEQALNLQSPTTSGVLQHGHIHTYEIETTRDRTRISSPTFDTGSDWFREIRGGDSKLGGLVYLLRSNEISRVSLV
Physico‐chemical
properties
protein length:380 AA
molecular weight: 42036,39590 Da
isoelectric point:5,16112
aromaticity:0,08684
hydropathy:-0,37579

Domains

Domains [InterPro]
DC_1722
ATT
1–173
DC_1722 IPR029052
YP_010246494.1
1 380
Architecture
ATT
STR
ATT 1-173 | STR 174-345 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010246494.1
1 380
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,1447
Central domain 137 335 200 0,0053
C-terminal 336 380 44 0,9965
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-136
Central
137-335
C-terminal
336-380

Taxonomy

  Name Taxonomy ID Lineage
Phage Gordonia Phage Sephiroth
[NCBI] 		2767553 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010246494.1 [NCBI]
Genbank nucleotide accession
NC_060135 [NCBI]
CDS location
range 63182 -> 64324
strand +
CDS
ATGGGCGTATTGGCAGCGCTGCTTAGTCAACCGACTGCACCTGAGCCGGCCCCAGCTCGGGAAACAATCACGGTCGACCAATCGGGCAACTACTCGAAGTCATTTTATACGGACCCGCATGATGACTTTTACATGCCCGCTAATCGTAAGGAGCTGCACAATGTTCTCGACGTACCTGACGGCTATGCGATTACGGGTGACGTCACTTATCGCAATCGTGAGCTTGTCAACGGCGGCAGTGTTACCGCTTTCACCTACAAGTTCCGAGAAGTACCCAAGCCCCTCGACATTGACGACCTGGCCGAGCGGGTAGCTAAGGCTCCCCCCGCTAACCCCATCCACGGGGCCGGCCCACACTGGTTCGTCTTCCAGGCCGGCGACTTGCAGCTAGGCAAAATCGCCCGCGACGGCTCCACCGAGCAGATCGTGGAAACCTACATGCAGTCCGTTCGGGCTGCCGTGGTCGAGTACGAAAGCCTGTCCGACGAGTTCGGCGTTTCCGGCGTCCAGTTGTCCTTCCCTGGCGATTGCATGGAAGGTGTGGTGTCTCAGGGTGGCCGCAACATTTGGCTCACTCAGGAGACGATTACGGAGCAAACGCGGATCTTCCGGCGTCTGCTGCTGTGGACGGTCGACCAGTTCGCTCCGATCGCTAACCACGTGTACGTCGATGTGGTCAACGGTAACCACGATGAGGCTAACCGTCAGGTGAACACGAAGCCTGGCGATGGTTGGGCTACCGAGTGCGCTATTGCCTTGTCGGATGCGATGGAACTTAACCCGGAGGCTTACGGGCACGTTGAGGTTCGGGTGCCTGATTCGTGGTGCGGGCACATGACTGTGCCGGTTGGGGATTCTCTGGTCACGGTGGCTCATGGTCACCAGTGGCGGCGCGGTAAAGGCATGGGTTGGTGGGCTGAGCAAGCCCTTAACTTGCAGTCCCCGACTACTTCGGGTGTTTTGCAGCACGGACATATTCACACCTACGAAATCGAGACTACGCGGGACCGCACTCGTATTTCGTCGCCCACATTCGATACCGGCTCCGATTGGTTTAGGGAGATTCGCGGTGGCGATTCTAAGTTGGGCGGTTTGGTGTACCTGTTGCGGTCCAATGAGATATCGAGAGTGAGTTTGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4c0cf365f944bf92d168c04fed85e30539feced41fc0a3b93cacdb41ae0002cd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8359
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50