Protein

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Genbank accession
XVB93812.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTLPTQNSIPSGNILDQIFNAEKIDEVVNSDNETYTDRFGVKRKTITGLWSLVNAWFNGLIRYDGQLLLGSPQSIEQLKLIQATSGVKINILGAFGSGDGGAGTWAYDGSDMSAQVTTYPKLFVPPNTDPTGKKGAWKLCPDGSDYLTIQYGVSIGDKLHNTETLNQLMDYNKSVFNIKLPPTIVQVTKLYSNYNPKLVGVPGVNSELSSLRVMGSLNNGTALVSRDADSTDPLLTVAGTSAARLAGVDISDLAIISGDLIDNRDLTTNAEWQVRSSRTGLRLDYIASKVKISNLTVCGFKKAHYFNEVWDGTIRDSAVSICSDSDGTVPAIFLGSESTDNTNNLTYDNVRIEHCPYSVYVGAVNHIRFVACKVETKRKDNATNFVISIDSSAINYTFLACMFVTNPVTEKHYLDERGQKGIWMGNHFTIGGITGLFPGVRWIKRGPTNTSHANFAFNDFKGCWQADGTDATLYPIYLAPGDQFVGGVVSTQDVYSINNAGTYNNFSPTNQGLISVEDSTRVNNVTFETNNNTKVLGSVFYARNAGYNISNNTYTGAPYSLLAGNTIDSRTRVSSSGGIIDVFDRNTVILSDVTKTITGFTGTTGNEFGVFAYAAGGIIKNNSMIVTTGGADITMEMNKFYKFKLINKTTAVQI
Physico‐chemical
properties
protein length:654 AA
molecular weight: 70992,81890 Da
isoelectric point:5,88678
aromaticity:0,09633
hydropathy:-0,17554

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB93812.1
1 654
Domain Start End Length (AA) Confidence
N-terminal 1 161 161 0,9916
Central domain 162 558 398 0,9845
C-terminal 559 654 95 0,9712
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-161
Central
162-558
C-terminal
559-654

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage VB_ZK_P1
[NCBI] 		3425683 Viruses > unclassified bacterial viruses >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB93812.1 [NCBI]
Genbank nucleotide accession
PV662128 [NCBI]
CDS location
range 140155 -> 142119
strand +
CDS
ATGACATTACCTACCCAAAATAGTATTCCCTCAGGGAATATTTTAGACCAAATTTTTAATGCTGAAAAAATAGATGAAGTCGTCAACTCGGATAACGAAACCTATACGGATAGGTTTGGGGTAAAAAGAAAGACCATAACCGGGCTGTGGTCCCTGGTCAATGCCTGGTTTAACGGTTTAATAAGGTACGACGGTCAGTTATTGTTAGGTTCGCCCCAGAGTATAGAACAACTAAAACTTATCCAGGCGACCTCAGGGGTAAAAATTAATATCCTTGGGGCGTTTGGATCGGGTGACGGAGGAGCCGGGACCTGGGCATATGATGGTTCTGATATGTCAGCGCAAGTCACCACTTACCCTAAATTATTCGTACCCCCCAACACAGACCCAACCGGAAAGAAAGGGGCGTGGAAATTATGTCCTGACGGATCGGATTATTTAACCATTCAATATGGAGTTTCGATAGGAGATAAACTCCATAATACCGAAACGCTTAATCAGTTAATGGATTACAATAAGTCGGTTTTTAATATAAAGCTTCCCCCAACAATAGTTCAGGTTACAAAACTTTACAGTAATTATAATCCCAAGCTCGTGGGGGTGCCTGGTGTCAATAGCGAACTTTCCTCTTTACGCGTGATGGGTTCTTTAAATAACGGCACGGCTTTGGTTAGTAGGGACGCCGATTCAACAGATCCACTGCTCACTGTGGCAGGAACATCGGCTGCAAGACTAGCGGGTGTTGATATCAGCGACCTTGCCATTATTAGTGGTGATCTTATCGATAATCGTGATTTAACGACCAATGCTGAATGGCAGGTACGGTCGTCAAGAACCGGATTACGATTAGACTATATCGCGTCTAAAGTTAAAATTAGTAACTTGACGGTATGTGGGTTTAAGAAAGCTCATTATTTTAATGAGGTTTGGGACGGAACGATTAGGGATTCTGCCGTCAGTATTTGTTCAGATTCCGACGGCACAGTTCCGGCTATTTTCTTAGGTTCCGAGTCCACAGACAATACCAATAATCTAACTTACGACAACGTGAGAATAGAACACTGCCCTTATTCAGTCTATGTTGGTGCGGTGAACCATATTAGATTTGTGGCCTGTAAGGTCGAGACGAAACGTAAGGATAACGCGACTAATTTTGTAATATCCATAGACTCCTCTGCTATTAATTACACTTTCCTAGCCTGTATGTTCGTTACAAACCCAGTTACCGAAAAACATTACCTTGACGAGCGAGGCCAAAAAGGTATTTGGATGGGGAACCACTTTACAATAGGCGGAATAACTGGACTCTTCCCTGGGGTGAGATGGATAAAAAGGGGACCAACAAACACCAGTCATGCTAATTTTGCTTTCAATGATTTTAAAGGATGTTGGCAGGCTGATGGTACTGACGCTACCTTATATCCGATATATCTTGCGCCAGGAGATCAGTTCGTCGGAGGAGTAGTTTCCACTCAAGACGTATACTCTATCAATAACGCTGGGACGTATAATAATTTCTCACCCACTAATCAAGGTTTAATTAGCGTCGAAGACTCAACTAGAGTCAATAACGTGACGTTTGAAACTAACAACAATACTAAAGTATTGGGTTCTGTCTTTTACGCCAGGAACGCAGGATACAATATTTCTAATAACACGTACACGGGGGCCCCTTATTCCCTATTGGCCGGAAACACGATAGATAGTAGAACTCGAGTCTCCTCCTCAGGGGGAATAATAGATGTCTTTGATAGGAACACGGTTATCTTAAGTGACGTCACCAAAACTATCACTGGGTTTACCGGGACAACCGGAAATGAGTTCGGGGTCTTTGCGTACGCTGCGGGAGGAATAATTAAAAATAATTCAATGATCGTCACCACTGGCGGTGCCGACATTACAATGGAAATGAATAAATTTTATAAATTTAAATTGATTAACAAAACAACTGCGGTTCAAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
86152ea88a01c7a61c1b6fefe030a6ee86b260a0bbc5dd106f0f45ac2ada4359
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9130
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and identification of R. ornithinolytica phage and its targeted bacteriostatic effect on chilled pigeon meat Feng,S., Zhong,L., Zhou,J., Huang,Y., Sun,Y., Yuan,D. and Liang,W. 2025 — GenBank