Protein

View in Explore
Genbank accession
QDH46479.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSVGLYGDGVSESQENINVTQYGWTNEDVAGITLIQDYLNQIQTLFEQVVILEASAQEMMLELDQIKQMTLEVRVMYADFIEKYPKIQEALDEMDATLILMQGLVQQVEDDKTHVDLVKSQIDTIKASIDASVIIVNQAVADVNAKASEVTTMRDQTNAYYLATKDIADELAKGQVYRGTWNPNSGTWPDPHGTNSVWDVVLNEGQSEYIWSGIKWLWGDRLLYLKDTSQFQQVESGVGVLTVNGKAGFVTLTPDDVGAVPVTRTVNGKALSSNITLTNTDVGAAPTGFGLGGTMNSTLLSGASCNIATETGWYNVFSGTTDTPFATGPSGSALSVMKWGSSSIHQVFYTYTADRVFTRRMYSGVWQPWIEIYSTAKKPTATDILSSNGKTLQYLTDKVNQVYDVKDFGAVGDGTTDDTAAVQSALDSIPSGSVLSFTKGTYKLNIVNVTKPVKLIGHAKIIVRSFRIKTSNFISELTGEIVAPDYNSTCRAFQCMAHLDSADYENIQILGANFSGYFYSTDIRGRDYSATASDPTNRIVKNVLIQGCTSKAPVGQNAGHFQHTGLTNVKCIGNSTYGGQNATSYNFINGNGDILVVGNYDENNSYGSLEIENNVISSGVVSGNMFGHDLWIDDTSNIHVVGNNTKRVIRITSQHNDVQNVSVVANRCAAVSVTTFGVSPVGVSRNITVNGNHIYNDLNSHCVFADNTVYSISVEGNQLYIAPGGTGNVVGLVRHANADHKVINNFCNSGKLLFSSTGGSVIEYGNIGVGSGSTAGSGTMYANYGNLVYHQGFKPTPNEIGTLTATEINSALSAKLNLSGGTMTGPITSQTSKSSIVVNGQASISYQDASQTVFHTLAFGNSFAIARNINGDTNIWTITGNGLTQQNGPAYTRTGLISQSLDSTKWISMESPDGMDPYIGSRGIGEANTSVAMRFGNQITIEKSTVFNNFPISAYNVNRAWNSYGVANFSAREVSGSAGILRASISYPFKITGSYAVDCYLGTYSESTIASDLYHVLGFTDGGNYNPVWRFGTSGTLKYYSNAVSGTIGNINSGSPMTAPSFTPTSDSRIKSDFVKIENCLEVIKNFTPYNYQKKGLEGREDGLVAQDVQRTLPDSVKVVSTDESLYGFTDVLGVNYSSVTAVNSGAINELHDLVKQLQEEIKVLKDVINSK
Physico‐chemical
properties
protein length:1172 AA
molecular weight: 126314,18120 Da
isoelectric point:5,09729
aromaticity:0,08959
hydropathy:-0,17850

Domains

Domains [InterPro]
DC_0101
STR
80–488
DC_0101 DC_0139
cd19958
STR
296–373
cd19958 IPR011050 IPR030392
IPR012334
STR
402–791
IPR012334 IPR030392 Coil
QDH46479.1
1 1172
Architecture
STR
STR 80-1172
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH46479.1
1 1172
Domain Start End Length (AA) Confidence
N-terminal 1 416 416 0,8986
Central domain 417 782 367 0,9813
C-terminal 783 1172 389 0,9192
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-416
Central
417-782
C-terminal
783-1172

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage LAh_6
[NCBI] 		2591030 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH46479.1 [NCBI]
Genbank nucleotide accession
MK838112 [NCBI]
CDS location
range 9384 -> 12902
strand +
CDS
ATGAGTGTTGGTTTATACGGGGATGGTGTTTCAGAGTCTCAAGAAAATATCAACGTAACTCAATATGGTTGGACTAATGAAGATGTAGCTGGTATTACTCTAATCCAAGACTACCTTAACCAGATCCAAACATTGTTCGAGCAAGTTGTTATTTTGGAAGCTTCTGCTCAAGAAATGATGCTTGAGTTAGATCAAATTAAACAAATGACCTTGGAAGTCCGTGTGATGTATGCGGACTTTATTGAGAAGTACCCAAAGATCCAAGAAGCGTTGGATGAAATGGATGCAACACTTATCCTCATGCAAGGGCTTGTACAACAAGTTGAAGATGATAAGACACATGTTGATTTAGTTAAGTCACAAATTGATACAATCAAAGCAAGTATTGATGCGTCTGTAATTATTGTTAACCAAGCTGTGGCTGATGTAAATGCAAAGGCTTCTGAAGTAACAACAATGAGAGATCAAACAAATGCATACTACTTAGCGACTAAGGATATTGCAGATGAACTCGCAAAAGGTCAGGTATATCGTGGAACTTGGAACCCCAATAGTGGAACATGGCCAGATCCCCACGGAACAAACTCCGTGTGGGATGTTGTTCTTAATGAAGGTCAGTCAGAGTACATCTGGAGTGGAATCAAGTGGCTGTGGGGAGATAGATTACTGTATCTCAAGGATACTTCTCAGTTCCAACAAGTAGAATCAGGTGTTGGTGTACTTACTGTTAATGGTAAAGCTGGTTTTGTAACATTGACCCCAGATGATGTTGGTGCAGTGCCTGTTACAAGGACTGTAAATGGTAAAGCACTCTCTAGTAACATCACCCTTACAAATACAGATGTTGGTGCAGCCCCTACTGGTTTTGGTCTTGGTGGAACAATGAACAGCACACTGCTTTCAGGGGCATCTTGTAACATTGCAACTGAAACGGGTTGGTACAACGTGTTCTCTGGGACAACAGATACACCTTTTGCCACTGGCCCCTCTGGTTCTGCGTTAAGTGTTATGAAATGGGGTTCTAGTTCAATACATCAAGTATTCTACACATATACAGCGGATAGGGTATTTACAAGAAGGATGTATAGTGGTGTTTGGCAACCTTGGATTGAAATTTACTCAACTGCTAAGAAGCCTACTGCAACCGATATCCTATCATCTAATGGTAAGACCCTCCAGTACCTAACTGATAAAGTAAACCAAGTTTATGATGTCAAGGATTTTGGGGCTGTTGGTGATGGAACAACTGATGATACAGCAGCTGTACAAAGTGCTCTTGACAGTATCCCATCAGGTTCTGTTTTATCCTTCACAAAAGGTACTTACAAACTAAACATTGTCAACGTGACTAAGCCTGTAAAACTAATTGGACATGCTAAGATTATTGTTAGAAGTTTCAGGATAAAAACAAGTAACTTCATTTCAGAACTAACTGGTGAGATTGTAGCTCCTGATTATAATTCAACCTGTCGAGCATTCCAGTGTATGGCTCACTTGGATAGTGCAGATTATGAAAATATTCAAATCCTAGGTGCTAATTTCAGTGGGTACTTCTACTCTACAGATATTCGAGGAAGGGATTACTCTGCTACAGCTTCTGATCCAACAAACCGGATTGTTAAGAATGTGCTTATCCAAGGGTGTACTTCAAAAGCCCCAGTTGGTCAGAATGCAGGACACTTCCAACACACAGGTTTGACGAATGTTAAATGTATTGGTAACTCTACATATGGTGGACAGAATGCTACATCCTACAACTTCATTAATGGGAACGGGGATATACTTGTTGTAGGTAACTATGATGAGAATAACTCCTACGGAAGTCTTGAAATCGAGAATAACGTGATCTCCTCAGGGGTTGTCAGTGGTAATATGTTTGGACATGATTTGTGGATTGATGACACAAGTAACATTCATGTAGTTGGCAACAATACTAAGCGTGTTATTAGAATCACCTCTCAGCACAATGATGTTCAGAACGTTAGCGTTGTTGCTAATAGATGTGCCGCAGTATCTGTTACCACTTTTGGTGTAAGCCCGGTTGGTGTGTCACGAAATATAACAGTTAATGGAAACCATATCTACAATGACTTAAACTCTCACTGTGTATTCGCAGATAATACAGTATATAGTATCTCTGTTGAGGGTAACCAACTTTATATTGCTCCTGGTGGAACTGGTAATGTTGTTGGTCTGGTTAGACATGCTAATGCTGATCACAAGGTCATTAACAACTTCTGTAACAGTGGTAAATTATTGTTCAGTTCTACTGGTGGGTCAGTAATTGAATACGGAAATATTGGTGTTGGGTCGGGCTCTACAGCTGGGTCTGGAACAATGTACGCTAACTACGGAAACTTAGTATATCACCAAGGTTTCAAACCAACTCCAAATGAAATAGGAACATTGACTGCAACTGAGATTAACTCTGCGTTAAGTGCAAAGCTTAATCTTAGCGGTGGTACAATGACTGGCCCCATTACATCCCAAACTTCAAAGAGTTCTATTGTTGTAAATGGACAGGCTTCTATTTCTTACCAAGATGCTAGTCAAACTGTGTTCCATACACTTGCTTTCGGTAATAGTTTTGCAATTGCAAGAAATATCAATGGTGATACAAATATTTGGACTATAACAGGTAATGGGTTAACACAACAAAATGGCCCAGCATATACCAGAACTGGTTTAATATCGCAAAGTTTAGACAGTACTAAATGGATTAGCATGGAAAGTCCAGATGGAATGGATCCTTACATCGGTAGTAGAGGTATAGGAGAAGCTAATACTTCAGTAGCTATGAGGTTTGGTAATCAAATCACTATAGAGAAGTCCACTGTTTTCAATAATTTTCCAATATCCGCTTACAATGTAAACAGGGCTTGGAATAGTTATGGTGTAGCTAACTTCTCAGCTAGAGAAGTCTCGGGATCCGCTGGAATTCTAAGGGCTTCAATTAGTTATCCGTTTAAGATAACTGGAAGCTATGCTGTAGATTGTTACTTAGGAACTTACTCTGAAAGTACTATAGCCTCTGATTTATACCATGTTCTTGGTTTTACTGACGGTGGTAATTATAACCCCGTTTGGAGATTTGGAACAAGCGGTACATTAAAATACTACTCTAACGCTGTATCTGGAACTATTGGGAATATTAATTCCGGTAGCCCAATGACTGCTCCTTCATTCACACCAACTTCAGACTCAAGGATTAAATCTGACTTTGTTAAGATTGAAAATTGTCTTGAAGTAATCAAAAACTTTACTCCATATAACTACCAGAAGAAAGGTTTGGAAGGAAGGGAAGATGGTTTAGTCGCACAAGATGTTCAGAGAACATTACCAGATTCTGTGAAGGTGGTCTCTACGGATGAAAGTTTGTATGGGTTTACTGATGTATTAGGCGTTAACTACTCAAGTGTCACTGCCGTAAACTCTGGGGCAATTAATGAGTTGCACGATCTTGTAAAACAATTACAAGAAGAGATTAAGGTTTTGAAGGATGTAATTAACTCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
91e60f57aebbb9b71ee600e113e2bb0ed433fe3976787262b67727de68f8bdec
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3023
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages capable of disrupting biofilms from clinical strains of Aeromonas hydrophila with intrinsic antibiotic resistance Kabwe,M., Brown,T.L., Speirs,L., Ku,H., Leach,M., Chan,H.T., Petrovski,S., Lock,P. and Tucci,J. 2020-02-14 — GenBank