Protein

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Genbank accession
AHK11218.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSLEKMECGVNYTTETIRTNINGLIDQNVSGIKSLESLGLYDGMKVSTNGFYVDTLVGGGNFVYDASKDKSLHNGGTVIAPEAIAAWDGSQVNLASLLNWAGTGTGCFVRLGKYDISSPLHNFGGGSEYSDNSKSISKMQAIGLTTDITGHGSIRLTSTSICNSGLRIFSSDKESKIVGFNGLGFGVGGGDISLVGVGIEGFYDGTELNKTNYTTAFCRVLTGSDIGSIVIDNVNATNNRSIIIAGSVVDDFMPDVTISCKKLSIKNSHVENCPMPVNWRGLCDESESTGNTYKNIIGAGRIVAAHKVYLDGIAYSSSSYLLCKNHKFIGNTVNTVVNRTTTGSSTTGNNYECHAVMLSGVKVIVSDNIITDCTGNVLDTEAIYLKAYSFDVHDNILTDAGSDEAAINLKGINDDGSTSSTSPFGYFGTCHSNIIEFTRSSYDNGGTIVNMSGKLTGIHVAAPSFVTVKGNKIKGADANDIRVNGWSGSKNQGCSVVDNHSYNFGGSESILWRGAFYDAKSNGNEVIDPIIPSTLTSFYHTRFLSVSGRGIENRNTEFKCNSISADVSDGRFNGKSISLLSLDLENYNFKSLSTGGNIFDVKYGASSPLFRVYDITSQTGSPTGFLFDIKALKDSVNVINSPYWFWGNQRVDGYSIEIECENITNNVNVTAQQFPVVANKVTSLNSKSDFSFDGVANVGSRWRVATYSDSAGSAIQNNKADVYSFRASASGEVDLSLTGAFATLRIFNTTTSDMRVKTIIKASSV
Physico‐chemical
properties
protein length:765 AA
molecular weight: 81749,03510 Da
isoelectric point:5,55223
aromaticity:0,09020
hydropathy:-0,14065

Domains

Domains [InterPro]
DC_0717
ATT
4–110
DC_0717
IPR059934
RBD
32–87
IPR059934
AHK11218.1
1 765
Architecture
ATT
ATT 4-110 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AHK11218.1
1 765
Domain Start End Length (AA) Confidence
N-terminal 1 130 130 0,9814
Central domain 131 600 471 0,9689
C-terminal 601 765 164 0,9343
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-130
Central
131-600
C-terminal
601-765

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella sp. phage 1/4
[NCBI] 		1458859 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella sp.
[NCBI] 		50422 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales
Host Shewanella sp. 4
[NCBI] 		1386772 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHK11218.1 [NCBI]
Genbank nucleotide accession
KJ018209.1 [NCBI]
CDS location
range 54843 -> 57140
strand -
CDS
ATGTCTTTAGAAAAGATGGAATGTGGTGTTAACTACACTACAGAAACAATTAGAACTAATATTAATGGTTTAATTGATCAAAATGTAAGTGGTATTAAATCACTAGAGTCCTTGGGACTCTATGATGGTATGAAAGTTTCTACAAACGGATTCTATGTTGATACATTAGTGGGTGGTGGTAACTTTGTATATGATGCAAGTAAAGATAAATCATTGCACAATGGCGGCACCGTGATTGCCCCTGAAGCTATTGCCGCTTGGGATGGTTCGCAAGTTAATTTAGCTTCGTTGCTAAATTGGGCTGGGACTGGGACTGGGTGTTTTGTTAGGTTAGGTAAGTATGATATATCGTCCCCGCTTCACAATTTCGGGGGAGGGAGCGAATATAGCGATAACAGTAAGTCAATATCTAAAATGCAAGCAATTGGGTTGACTACTGATATCACTGGGCACGGCTCGATCAGGTTAACCTCTACGTCAATTTGCAATAGTGGATTAAGAATATTTTCAAGTGATAAAGAGTCAAAAATAGTAGGCTTTAACGGCTTGGGGTTTGGTGTCGGCGGTGGCGATATTTCACTTGTTGGAGTGGGAATCGAAGGTTTTTATGATGGAACAGAGCTAAATAAAACTAACTACACAACTGCGTTCTGTAGGGTGTTAACTGGTTCTGATATAGGTAGCATTGTTATTGATAATGTTAATGCTACGAATAACCGATCAATAATCATAGCGGGCAGCGTCGTAGATGATTTCATGCCTGATGTGACCATATCATGCAAAAAACTATCTATAAAAAATAGCCACGTAGAGAATTGTCCAATGCCAGTAAATTGGCGCGGGTTATGCGATGAAAGCGAGTCTACTGGAAACACATACAAAAATATCATCGGTGCAGGTCGTATAGTTGCGGCGCACAAGGTTTATCTTGACGGAATAGCTTATAGCTCATCGTCATACTTGCTTTGCAAAAATCATAAATTTATTGGTAACACTGTTAACACAGTAGTAAACAGAACCACAACAGGAAGTTCTACAACTGGTAACAATTATGAATGCCACGCTGTAATGTTATCCGGTGTTAAAGTTATCGTGTCAGATAATATAATTACTGATTGCACAGGAAACGTGCTAGACACGGAGGCTATTTATCTAAAGGCGTATTCTTTTGATGTGCATGACAATATACTTACTGACGCCGGATCGGACGAGGCCGCTATAAACTTGAAGGGGATTAATGATGACGGCTCAACTTCTTCGACTTCTCCGTTTGGTTACTTTGGCACTTGTCACAGTAACATAATAGAGTTTACAAGAAGCTCTTACGATAACGGTGGTACTATTGTTAATATGAGCGGTAAGCTGACAGGTATACATGTAGCAGCGCCTTCATTCGTTACAGTTAAGGGCAATAAGATCAAAGGGGCAGATGCAAACGACATAAGAGTCAACGGATGGTCAGGATCTAAAAATCAGGGGTGTTCTGTTGTAGATAACCACTCTTACAACTTCGGTGGGTCTGAATCTATTTTGTGGAGGGGTGCATTTTATGACGCTAAATCTAACGGCAATGAGGTTATTGATCCCATAATCCCAAGTACATTGACTTCATTCTATCACACTAGGTTTTTATCTGTCTCAGGTAGAGGTATAGAAAACAGAAATACAGAGTTTAAATGCAACTCAATTTCAGCAGATGTAAGTGATGGTAGGTTTAACGGAAAGTCTATATCGCTTCTTTCTTTAGACTTAGAGAATTATAATTTTAAATCATTATCAACTGGTGGTAATATTTTCGATGTTAAATATGGCGCTTCATCGCCTTTGTTTAGGGTGTATGATATAACATCCCAAACCGGATCGCCTACTGGCTTTTTGTTCGACATAAAGGCGCTAAAAGACTCCGTTAACGTTATAAACTCACCATACTGGTTTTGGGGCAACCAAAGGGTAGATGGGTACAGTATTGAAATTGAATGTGAGAATATAACAAACAATGTAAATGTAACCGCCCAGCAATTTCCGGTGGTGGCCAACAAAGTCACGAGCTTAAACTCAAAATCAGATTTTAGTTTTGACGGAGTAGCCAACGTTGGGTCAAGGTGGAGAGTTGCGACATATAGCGACAGTGCAGGATCAGCGATACAGAATAACAAAGCTGACGTTTACAGCTTTAGGGCTAGTGCTTCTGGCGAAGTTGACTTAAGCTTGACGGGCGCATTTGCTACGCTTAGAATTTTTAACACTACAACCAGCGACATGAGAGTAAAAACAATAATAAAAGCATCTTCAGTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ccc5385699bc6ba257e0fc8187448be764d95a50da4700ba8eb72234bbd99ab4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6824
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of phage-host systems from the Baltic Sea ice Luhtanen,A.M., Eronen-Rasimus,E., Kaartokallio,H., Rintala,J.M., Autio,R. and Roine,E. 2014 24297705 GenBank
Cold-active bacteriophages from the Baltic Sea ice have diverse genomes and virus-host interactions Sencilo,A., Luhtanen,A.M., Saarijarvi,M., Bamford,D.H. and Roine,E. 2014 25156651 GenBank