Protein

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Genbank accession
QFR42384.1 [GenBank]
Protein name
tail fiber - EPS depolymerase
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADQSTIVEIPLTSSTRAVTIPFDYLTRSAVVLTIKQEDDVTFEKVLRLTDDYRFTGLTEVTLNGDYSSFGDLLEVKRHTPATRLVDFRDGSVLTANSLNISQLQAIHIAEEGRFEITTEIREATADAQRFAKESAASAAESLTYRNSTQKIWDGILDSIQAAGDKGTLGYLATPAGFSAIGGYISFDALRLSKPQYEGQRVRLESYYEGKHLGGGEFVGHLTTAVDDGGIIASGPSHHWKRIVNVAEMNVTHFGALMDGITDDMQAVVKMHAWSRSFDPTFGPGVVLPAGKIGLSYNDWGDAEIPAFKLIGPSVAYGRLPCVQIIPTNKTYLGYMFRFKARRMVIQNIYINGEGSKCGFLENTVTRGDYARISTVQARNLNGRAFHLWDTIDTKLDQCYSSKGKSSFFRTDWSNESPGAWDHPTAIEISNCNFEGHTGEYAVSAIRAGQSEMNNVWFDRNERGFDISQGGWVIKNVTQENSVNPSAIQYTKLTQIQCRFDQGAGMSEDVSGYDPSWDPSGKPPTWVTNAMDQGRTVIAPTGTTMKSGFARAFEYPLAEMRFTNSSGNEKWIKVCSITQNDTLGATFELELQGANGYDNVGTSTTHPGATGFGGGRALIRGQLKYNRATTDGIQLTWHGEGACPIKEVRYVHAWQNFEIYVRVGAFNRTLGAFVRSDGVGRLASGKPFFVRYGSSDPVDIASVANLKTAKKAWSINGGTAGTNQNNTGLGMDLETGTLLLASPEEGSAAGRYLKIKNNYQDRYIPVQTTMESTRVNRYARANLPAADGENAYGVILCTDSGAGSGASTRFELLFSDGLKWCRAKDGSTVTKG
Physico‐chemical
properties
protein length:832 AA
molecular weight: 90872,50120 Da
isoelectric point:6,12283
aromaticity:0,09856
hydropathy:-0,35288

Domains

Domains [InterPro]
IPR005604
ATT
5–127
IPR005604 IPR011050
DC_0471
ATT
15–290
DC_0471
IPR012334
STR
248–513
IPR012334
DC_0716
STR
270–792
DC_0716
QFR42384.1
1 832
Architecture
ATT
STR
ATT 5-290 | STR 291-792 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFR42384.1
1 832
Domain Start End Length (AA) Confidence
N-terminal 1 264 264 0,9968
Central domain 265 532 269 0,9720
C-terminal 533 832 299 0,9501
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-264
Central
265-532
C-terminal
533-832

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagP-SK1
[NCBI] 		2653646 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Elunavirus
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFR42384.1 [NCBI]
Genbank nucleotide accession
MN450150.1 [NCBI]
CDS location
range 33177 -> 35675
strand +
CDS
ATGGCCGACCAATCTACTATCGTTGAGATTCCCTTAACGTCCTCTACTCGTGCCGTCACGATTCCTTTCGATTACCTTACGCGCTCCGCTGTGGTCCTTACCATTAAGCAGGAAGATGACGTAACGTTTGAGAAGGTTCTGCGTCTGACGGACGACTATCGCTTTACAGGTCTGACTGAAGTCACACTCAATGGCGACTACTCCTCTTTTGGTGACCTGCTTGAAGTTAAGCGTCACACCCCGGCTACCCGTCTGGTAGACTTCCGGGACGGTTCGGTACTTACCGCGAACTCTCTGAACATCTCACAGCTTCAGGCTATCCACATTGCTGAGGAAGGCCGCTTCGAGATTACCACTGAGATTCGTGAGGCCACGGCTGACGCACAGCGTTTCGCCAAGGAGTCTGCTGCAAGTGCTGCCGAGAGCCTGACCTACCGTAACTCCACTCAGAAAATCTGGGATGGCATTCTGGATTCAATCCAAGCGGCTGGCGACAAGGGCACTCTGGGTTACTTAGCGACCCCTGCTGGTTTCTCCGCTATTGGTGGCTACATCTCGTTTGATGCCCTGCGCCTCTCGAAGCCTCAGTACGAAGGACAGCGTGTTCGCCTTGAGTCCTATTACGAGGGCAAACATCTGGGTGGCGGTGAGTTCGTTGGTCACCTGACGACCGCTGTTGATGATGGCGGTATCATTGCCTCTGGCCCATCGCACCACTGGAAGCGTATCGTTAATGTCGCTGAGATGAATGTGACACACTTCGGTGCACTGATGGATGGTATCACCGATGACATGCAGGCAGTCGTTAAGATGCACGCGTGGTCTCGCTCGTTTGACCCGACCTTCGGTCCCGGTGTGGTTCTGCCTGCTGGTAAGATTGGTCTGAGCTACAACGATTGGGGCGATGCAGAGATTCCTGCGTTCAAGCTGATTGGACCTTCAGTGGCTTATGGTCGCTTACCGTGCGTTCAGATTATCCCTACGAACAAGACTTATCTGGGCTACATGTTCCGGTTCAAGGCTCGTCGTATGGTTATCCAGAACATCTACATCAACGGTGAGGGTTCTAAGTGTGGCTTCCTTGAGAACACTGTGACTCGTGGTGACTACGCTCGTATCTCAACGGTACAGGCGCGTAACCTCAATGGTCGTGCGTTCCACCTGTGGGACACCATCGACACCAAGCTGGACCAGTGCTATTCCTCTAAGGGTAAGTCCTCGTTCTTCCGTACCGATTGGTCTAACGAATCTCCGGGCGCATGGGACCATCCGACTGCTATCGAAATCTCCAACTGTAACTTCGAGGGTCACACAGGCGAGTATGCGGTTTCCGCTATCCGTGCTGGTCAGTCCGAGATGAACAACGTTTGGTTCGACCGCAACGAGCGTGGCTTCGATATCTCTCAGGGTGGCTGGGTCATTAAGAACGTGACTCAGGAGAACTCCGTGAATCCGTCTGCGATTCAGTACACCAAGCTGACTCAGATTCAGTGCCGCTTCGATCAGGGTGCAGGTATGTCTGAGGATGTGTCCGGCTATGACCCTTCATGGGACCCGAGCGGTAAGCCACCTACATGGGTGACTAACGCAATGGACCAAGGTCGTACCGTGATTGCTCCTACTGGCACAACCATGAAGTCTGGCTTTGCGCGTGCTTTCGAGTATCCGCTGGCAGAGATGCGTTTCACCAATAGCTCAGGTAACGAGAAGTGGATTAAGGTGTGCTCCATTACTCAGAACGATACTCTGGGTGCGACCTTCGAGTTAGAACTTCAGGGCGCGAATGGTTACGACAACGTGGGAACCTCTACGACCCATCCGGGCGCTACTGGTTTCGGTGGTGGTCGTGCACTGATTCGTGGTCAGTTGAAGTATAACCGAGCGACCACTGACGGTATTCAGCTTACGTGGCATGGTGAGGGCGCTTGTCCAATCAAAGAGGTTCGTTATGTTCACGCATGGCAGAACTTTGAGATTTACGTCCGTGTTGGTGCGTTCAACCGTACTCTGGGTGCCTTCGTGCGCTCTGATGGTGTTGGTCGTCTGGCATCCGGTAAGCCGTTCTTCGTGCGTTACGGTAGCTCTGACCCGGTTGATATCGCCTCAGTTGCGAACCTGAAGACCGCTAAGAAAGCATGGTCCATCAATGGTGGCACCGCTGGTACTAACCAGAACAACACTGGCCTCGGTATGGACCTCGAAACGGGCACACTGCTGCTGGCTTCTCCAGAGGAAGGTTCGGCTGCTGGTCGTTACCTGAAGATTAAGAACAACTATCAAGACCGTTACATCCCTGTGCAGACCACAATGGAATCCACCCGCGTTAACCGTTACGCCAGAGCTAACCTTCCGGCTGCTGATGGTGAGAACGCCTACGGTGTAATCCTGTGTACTGACTCTGGTGCAGGCTCCGGTGCGTCCACTCGGTTTGAACTCCTGTTCTCTGATGGTCTCAAGTGGTGCCGCGCTAAGGATGGATCAACGGTAACTAAAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3442b721013afe5816854b37b45f3d88481d98219a063046c24c6f05ac789337
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7002
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of vB_PagP-SK1, a T7-like phage infecting Pantoea agglomerans McDougall,D.L., Soutar,C.D., Perry,B.J., Brown,C., Alexander,D., Yost,C.K. and Stavrinides,J. — — GenBank