Protein

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UniProt accession
A0A8S5SMD2 [UniProt]
Protein name
YadA-like protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNNKLVLATMVMAAVTGSTFANGIVVGQVEPNTTAPVVNGYNSVAVGANTVVTGTNTIVIGRDNKVTGNDSVVIGGGNGTIKADQASVIGYNNYVGNNKEQTVLGANNTVDNQGAVVVGTHSVVRGIDAVVIGNNASAPIQNSVAIGTNSQTDNPVGVRQVVLNGTTHVFAGENPNSVVSFGSKKSDTYSGINNYNRQLHNVSAGRVDPSSLDAVNGSQLYAAYDEIASMGAKLAKHDKDIKCLNIRVDRNVNNIKNLNDKVDNNYTTITNSINATNERVGANSKAIQDNTDAINRHETVINNHATIINNHEQQLQSHEQTLVDHANVLENHENRIESLERGMTRNVEREIGKAGAANAALSALHYLGYNKDDKLTFSVGVGHYKGHSAVALGGFYAPNEHVMFSVGGTLGSEKMVNAGVSFRLGKGSEYELNHKGKIKELETLVTQLVAEVEQLKAGK
Physico‐chemical
properties
protein length:459 AA
molecular weight: 48622,39710 Da
isoelectric point:6,43204
aromaticity:0,04357
hydropathy:-0,32026

Domains

Domains [InterPro]
IPR011049
STR
8–120
IPR011049 G3DSA:2.60.40.4050 G3DSA:1.20.5.170 Coil IPR005594 Coil
IPR011049
STR
37–224
IPR011049 Coil G3DSA:3.30.1300.30
IPR011049
STR
37–220
IPR011049 G3DSA:3.30.1300.30
cd12820
STR
39–153
cd12820 IPR045584
IPR008640
Unmapped
53–77
IPR008640 IPR008640
A0A8S5SMD2
1 459
Architecture
STR
RBD
ATT
STR 8-274 | RBD 325-368 | ATT 369-425 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5SMD2
1 459
Domain Start End Length (AA) Confidence
N-terminal 1 12 12 0,0016
Central domain 13 365 354 0,6566
C-terminal 366 459 93 0,5001
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-12
Central
13-365
C-terminal
366-459

Taxonomy

  Name Taxonomy ID Lineage
Phage Podoviridae sp. ctf5T2
[NCBI] 		2827743 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAF51823.1 [NCBI]
Genbank nucleotide accession
BK032623 [NCBI]
CDS location
range 34736 -> 36115
strand +
CDS
ATGAACAACAAATTAGTATTAGCAACAATGGTTATGGCAGCAGTTACAGGTAGCACATTTGCAAATGGTATTGTGGTAGGTCAAGTAGAACCAAATACTACTGCACCAGTAGTCAATGGGTATAATTCTGTAGCAGTAGGTGCAAATACAGTAGTTACAGGTACAAATACAATCGTAATTGGACGTGATAACAAAGTAACAGGAAATGATAGCGTTGTAATCGGTGGTGGTAACGGAACAATCAAAGCAGACCAAGCAAGCGTAATTGGTTATAACAATTATGTAGGTAACAATAAAGAACAAACTGTACTAGGTGCTAATAATACTGTAGATAATCAAGGTGCAGTAGTTGTAGGCACACATAGTGTAGTGCGTGGTATCGATGCAGTAGTCATTGGCAATAATGCATCAGCACCTATTCAGAATAGCGTGGCGATTGGAACGAATAGCCAAACTGATAACCCTGTAGGTGTTCGACAAGTTGTATTGAATGGTACAACTCACGTATTCGCAGGTGAGAACCCTAATAGCGTAGTATCATTTGGTAGTAAGAAAAGTGATACATATAGTGGTATCAATAACTACAATCGACAATTACATAATGTAAGTGCAGGTCGTGTAGACCCTAGTAGTTTAGATGCAGTCAATGGCAGTCAGTTATACGCTGCATACGATGAAATCGCATCTATGGGTGCTAAGTTAGCGAAACACGATAAAGATATTAAGTGCTTGAATATCCGTGTAGACCGCAATGTAAATAACATCAAAAATTTAAACGATAAGGTGGATAATAACTATACAACGATTACTAACTCTATCAACGCTACAAACGAGCGTGTAGGGGCAAATTCTAAAGCTATTCAAGATAATACTGATGCAATTAATCGTCATGAAACAGTAATCAACAATCATGCAACGATCATTAACAACCATGAACAACAATTACAATCTCATGAACAAACTTTAGTAGACCATGCGAACGTATTGGAAAACCATGAAAACCGCATCGAAAGTTTAGAACGTGGAATGACACGAAATGTAGAACGTGAAATTGGTAAGGCTGGTGCAGCGAATGCAGCGTTATCCGCATTGCACTACTTAGGCTACAACAAAGACGATAAATTGACATTCTCCGTTGGTGTAGGTCATTACAAAGGTCATAGTGCAGTAGCACTAGGTGGTTTCTACGCACCGAACGAACACGTAATGTTTAGCGTAGGCGGTACACTTGGTTCTGAAAAAATGGTAAATGCTGGTGTAAGTTTCCGATTGGGTAAAGGTTCTGAATATGAACTCAACCATAAAGGCAAAATCAAAGAACTTGAAACATTGGTTACTCAATTAGTAGCGGAAGTAGAACAGTTGAAAGCTGGTAAGTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0019867 outer membrane Cellular Component IEA:InterPro (UniProt)
GO:0015031 protein transport Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
4a831292ce75b638d2bda4811d5deceb26c1ce857f0691e1c26c691834cdd628
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8721
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50