Protein

View in Explore
Genbank accession
AVO23866.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MNQQSRLAWWMMAGGRFAFDSTWANNTYVNGYPRGAVLPAAIGAGLIGMGEWYNNAEANTADPDVNGAGWVPGYHYGVTALTGQTGGTLTLSPAQAAKRTLTIAGTLTSNLVVVLPAWVYTWRIVNNTGGAYTVTVKNAATTGVVIPQNGVSTTVHCDGTQVSFDSPNIPAAVLSTQPMQLGQATGRLLAVRRFAVAGATTYTPTTGTNTVIVEVVGAGASGAGTVAALSGQAAAGGGGGGGAYAKARIVSGFAGVTITVGAPGVSAAPGNAGQAGGASSFGSLVVCPGGAGGAQGQGSSSANYSAPGLGAAAPTFGGSADVIMAASGAAGSPGLLFSSSIVISGNGANTPYGSGGGGAGSSTAGQTGTGLSAGGQGSGGGGGFSTSGGSPGSGGSGGGGLVLVWEYA
Physico‐chemical
properties
protein length:408 AA
molecular weight: 38826,47140 Da
isoelectric point:8,54640
aromaticity:0,07108
hydropathy:0,20319

Domains

Domains [InterPro]
DC_1179
STR
1–370
DC_1179
IPR049304
STR
197–404
IPR049304
AVO23866.1
1 408
Architecture
STR
STR 1-404 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XPP4
[NCBI] 		2099856 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVO23866.1 [NCBI]
Genbank nucleotide accession
MG944230.1 [NCBI]
CDS location
range 32 -> 1258
strand +
CDS
ATGAATCAACAGTCGCGCCTTGCGTGGTGGATGATGGCCGGCGGTCGTTTTGCGTTCGACTCGACCTGGGCCAATAACACCTACGTCAACGGCTATCCGCGTGGTGCGGTGCTGCCGGCGGCAATCGGTGCCGGTCTGATCGGCATGGGCGAGTGGTACAACAACGCCGAAGCTAACACCGCCGATCCGGACGTCAACGGCGCAGGTTGGGTGCCGGGCTATCACTACGGCGTGACGGCGTTGACGGGCCAGACCGGCGGCACACTGACGCTATCTCCGGCGCAGGCGGCTAAGCGCACGCTCACAATCGCCGGCACGCTGACATCGAACCTCGTCGTTGTCCTGCCGGCCTGGGTCTACACCTGGCGCATCGTCAACAACACCGGGGGCGCGTACACCGTCACCGTAAAAAACGCCGCTACGACCGGCGTGGTCATCCCTCAAAACGGGGTTTCGACGACCGTACATTGCGACGGCACGCAGGTCTCGTTCGACTCGCCTAACATCCCGGCCGCGGTGCTGTCCACGCAGCCAATGCAACTCGGTCAGGCGACAGGTCGTTTGCTGGCCGTGCGCCGCTTTGCCGTCGCTGGCGCGACGACCTACACACCGACAACCGGTACTAACACCGTGATCGTCGAGGTCGTGGGCGCAGGCGCGAGCGGGGCCGGTACCGTGGCCGCGTTGAGCGGGCAAGCCGCCGCAGGTGGCGGTGGCGGTGGCGGCGCCTACGCTAAGGCGCGCATCGTGTCGGGCTTTGCGGGCGTGACGATCACCGTCGGCGCGCCGGGCGTGTCGGCTGCACCGGGTAACGCAGGTCAAGCCGGTGGTGCATCGAGCTTTGGTAGTTTGGTCGTGTGTCCGGGCGGAGCGGGCGGCGCGCAAGGTCAGGGCAGTTCGTCGGCGAACTACTCCGCCCCTGGTCTAGGTGCCGCGGCGCCGACCTTTGGCGGTAGCGCCGACGTGATCATGGCCGCAAGCGGCGCGGCAGGCAGCCCGGGTCTGTTGTTCAGCTCGAGCATCGTCATCAGCGGCAACGGTGCTAACACGCCGTACGGTTCGGGCGGTGGCGGCGCGGGGTCGAGCACGGCCGGTCAGACTGGTACGGGGTTGAGCGCCGGCGGCCAGGGCAGCGGCGGCGGTGGCGGGTTCAGTACGTCGGGCGGTAGCCCTGGTAGCGGCGGATCGGGCGGTGGCGGCCTCGTACTCGTTTGGGAATACGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3320d9744ee5752e69f2d5063bba63606d92a32f212ae0818dc300b6bcf2cee5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8754
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and comparative genomics of Xanthomonas oryzae pv. oryzae bacteriophages Varga,I., Molnar,J., Gazdag,A., Szucs,D., Doffkay,Z., Valappil,S.K., Papp,S., Pinter,R., Vera Cruz,C.M., Ricardo,O., Vizi,T., Schneider,G., Rakhely,G. and Kovacs,T. 2019-07-03 — GenBank