Protein

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Genbank accession

YP_009850354.1 [GenBank]

Protein name

baseplate wedge subunit

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MKQNLNIGQVVDDGGGDYLRLGGQKINNNFDELYYQLGDGTYPHAAGAWKTHSAATSIRLDPKMGDSFAINTQAARVTVYLPKGKPSDYNSVIRLRDVWSTWRLSPVTVVPASGDTIKGSASPKTFNTNYQDLELVYCSPGRWEYINGKTIEKFTNGDLATVSKKSIIATEGQTDFLDIFDGEEYNPESLNVYRRGNMLFYGENGFDPVNADYGSPGPNNTIVALNKKDVRLVKPCSEGDVIIFETFLDGIGVWRSSYNKVTVMVRSNKLTSEKTVQGSKIVADLSTLRELSVADLGVLPGIDMNPNSIEVEINGKSQVEAGTGGLPEFICEGAPGESLQDCIANGGTWVQSDSDYRLIFDSDGIKVSGIRFGQPFEDQDIITVRWYNNNIGTTMSMDDIVSETDLIYMNAEETVDLKNRIEYTDYQNPSQKTKVDVPNEYDVRLSNISAFFDSIYPIGTIYENAHNPANPRDYMGMGVWKMYGEGHASVGWASDISNPYFALNNNDLDSSGRPSHSAGGTVGEVEFQISANNIPELKSDDTVLIADDNGTVVIGGCQLDPDASGPGYSKYREGSITVNKGAGGLPISNVQPSITVYRWIRVA

Physico‐chemical properties

protein length:	603 AA
molecular weight:	65995,53520 Da
isoelectric point:	4,60762
aromaticity:	0,09287
hydropathy:	-0,40365

Domains

Domains [InterPro]

IPR034695
Unmapped
1–603

IPR034695

IPR036240
STR
1–231

IPR036240 IPR054430 IPR053827

DC_2238
STR
1–580

DC_2238

IPR008987
ATT
2–152

IPR008987 IPR056391

G3DSA:1.20.5.960
Unmapped
13–41

G3DSA:1.20.5.960

YP_009850354.1

1 603

Architecture

ATT

STR

ATT

ATT 1-263 | STR 264-450 | ATT 451-602 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR034695	Unmapped	-	1	603	InterPro	Baseplate wedge protein gp10	-	-	-	-
IPR036240	STR	IPR036240	1	231	Merged direct domain	Gp9-like superfamily	Central	Low	Positional only	146 proteins / 146 hits
DC_2238	STR	DC_2238	1	580	Novel HMM	DC_2238	Central	Low	Positional only	73 proteins / 73 hits
IPR008987	ATT	DC_0752	2	152	InterPro cluster	Baseplate structural protein Gp9/Gp10, N-terminal domain	Central	Medium	Text match	242 proteins / 243 hits
G3DSA:1.20.5.960	Unmapped	-	13	41	Gene3D	Bacteriophage t4 gene product 9 (gp9)	-	-	-	-
IPR056391	ATT	DC_0417	162	263	InterPro cluster	Baseplate protein gp9-like, C-terminal	C-terminal	Medium	Text match	98 proteins / 98 hits
IPR054430	TAS	DC_0704	268	389	InterPro cluster	Baseplate wedge protein gp10, domain 3	Central	High	Text match	67 proteins / 67 hits
IPR053827	ATT	DC_0313	451	602	InterPro cluster	Baseplate structural protein Gp10, C-terminal domain	C-terminal	Medium	Text match	489 proteins / 489 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_009850354.1

1 603

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	315	315	0,9330
Central domain	316	514	200	0,1916
C-terminal	515	603	88	0,9187

Note: Constraints were applied during segmentation.
Fixed 9 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-315

Central
316-514

C-terminal
515-603

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Klebsiella phage Marfa [NCBI]	2587809	Uroviricota > Caudoviricetes > Marfavirus >
Host	Klebsiella pneumoniae [NCBI]	573	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

YP_009850354.1 [NCBI]

Genbank nucleotide accession

NC_048798 [NCBI]

CDS location

range 84687 -> 86498
strand +

CDS

ATGAAACAAAATTTAAATATTGGCCAAGTAGTCGACGACGGCGGCGGGGATTATCTCCGCCTTGGTGGCCAAAAGATTAATAACAACTTTGACGAACTGTACTATCAATTAGGTGATGGTACTTATCCTCATGCCGCTGGTGCTTGGAAAACCCACTCAGCAGCTACTTCTATTCGACTTGACCCTAAAATGGGTGATAGTTTCGCTATTAATACCCAGGCGGCTCGCGTAACAGTTTATCTTCCTAAAGGTAAACCTTCGGACTACAACAGTGTTATTCGTCTACGTGATGTATGGTCTACCTGGCGGTTGTCTCCTGTGACTGTGGTTCCTGCCTCAGGCGATACTATTAAAGGTTCTGCATCTCCTAAGACCTTTAATACTAACTATCAAGATCTTGAGCTGGTTTATTGCTCTCCAGGTAGATGGGAATACATCAACGGCAAAACCATTGAAAAATTTACTAATGGCGATTTAGCTACAGTTTCTAAGAAATCAATTATTGCCACTGAAGGCCAAACTGACTTCTTAGACATTTTTGATGGTGAAGAATATAATCCAGAATCTCTGAATGTCTATCGCCGTGGTAATATGTTGTTTTATGGCGAAAATGGATTTGACCCGGTTAATGCAGATTACGGTTCTCCAGGCCCAAATAACACTATTGTGGCTTTGAATAAAAAAGATGTTCGGTTAGTTAAGCCTTGTTCTGAAGGTGATGTAATTATTTTCGAAACCTTTTTAGATGGTATTGGTGTATGGCGTAGCTCATACAACAAAGTTACTGTTATGGTTCGCAGTAACAAACTTACCTCCGAGAAAACAGTCCAAGGCTCTAAAATTGTAGCCGACTTGAGTACCCTGCGTGAACTTAGCGTCGCAGATTTAGGTGTTCTTCCTGGTATAGACATGAACCCAAATTCTATCGAGGTAGAAATAAACGGTAAAAGTCAGGTCGAAGCAGGGACAGGTGGTCTTCCGGAGTTTATTTGTGAAGGTGCCCCTGGTGAATCTTTACAAGATTGTATAGCTAATGGTGGGACTTGGGTCCAATCGGACTCCGATTATCGTTTGATATTTGATAGTGACGGGATTAAAGTTTCTGGTATCAGATTCGGTCAACCTTTTGAAGACCAGGATATCATTACTGTCCGTTGGTACAATAACAACATCGGGACCACGATGTCCATGGATGATATTGTTTCTGAGACAGATCTGATTTATATGAATGCCGAAGAAACAGTAGACCTTAAAAACAGAATCGAATACACTGATTATCAGAACCCGAGCCAAAAAACTAAAGTTGACGTGCCTAATGAGTACGATGTTCGGTTATCTAACATCTCGGCATTTTTTGACTCAATTTATCCTATAGGAACAATTTATGAAAATGCTCATAACCCGGCTAACCCACGAGATTACATGGGTATGGGTGTATGGAAGATGTACGGTGAAGGCCATGCATCTGTAGGGTGGGCTTCTGATATAAGTAATCCTTACTTTGCATTAAATAATAATGACCTAGACAGTTCAGGTAGGCCGTCTCATAGCGCTGGAGGCACGGTCGGCGAAGTTGAATTCCAGATTTCAGCAAATAACATCCCCGAACTCAAATCTGATGATACGGTTCTTATTGCTGATGATAATGGTACCGTAGTTATCGGCGGGTGTCAGTTAGATCCTGATGCATCTGGTCCTGGGTATTCCAAATATAGAGAAGGTTCTATCACCGTAAACAAAGGCGCTGGTGGCTTACCTATTTCTAACGTTCAACCTTCTATAACTGTCTATCGCTGGATAAGGGTGGCATAA

Genome Context

Tertiary structure

PDB ID

bfeb36645796bd8b7fc6fadf5a5d2d18a658853a3881c553d344d24e5964eb35

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6465

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence