Protein

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Genbank accession
AYP28515.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,89
Protein sequence
MYINNGRINYNNEYGYRRGIYREPFYSDNADYNTNSKSYYDYLARFNGFIFELCDFVNGLADDIQKMKDTYDALTLSNTDVTYTVGQKGDFDTLNHCFDYIENLIVQPKSIRVILLKDYMMREQLFLRDKRYNHITITSENDIVEAYETELNRQVEIKTNPIFRVKPLFYGINSTFPKIDFKLQNKDFSDSINCGFLMDNTTFEMTERGGSTHFNFIGLCGVNGSHIGANYCDFSYNGNREQLEEYNKDQNMYGDGLRIFNSSLTGNYMTVNRCGEIGIHFSHGASGYIDFTEARFNGHHGLMVTTGSQASARNCKITDTIDDNVVSYASSDIDLRSSDCSNSQTTYGVIATRSSNINFDKGIANGCGASGIMANRGCSIDATGATASRNKWHGVIASNNSKVDFTSGNANENGLDGIQCTHGSTVQARLSTANGNKRNGVLAYAGDVYCQEINCDGNGRRGLEATRGGYVAAYGAKVSRSKDDNVLAYGSMISINEAVIERAGRNGIEATRGGQIFADRITITGSGDFGILAYASKVFAEASNISGTKNEPVYATRGGEVTCFGSNISSNKTVYNVYNGSRIFTDKDHGYSTNIEPNTMDSKGFIIKG
Physico‐chemical
properties
protein length:609 AA
molecular weight: 67269,55210 Da
isoelectric point:5,65721
aromaticity:0,10837
hydropathy:-0,48407

Domains

Domains [InterPro]
DC_1478
STR
4–609
DC_1478
IPR012332
STR
221–451
IPR012332
IPR039448
ENZ
301–448
IPR039448
AYP28515.1
1 609
Architecture
STR
STR 4-609
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYP28515.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1239
Central domain 11 598 589 0,9387
C-terminal 599 609 10 0,2288
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-598
C-terminal
599-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage Pontiff
[NCBI] 		2483715 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis RP62A
[NCBI] 		176279 Bacillota > Bacilli > Caryophanales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP28515.1 [NCBI]
Genbank nucleotide accession
MH972262.1 [NCBI]
CDS location
range 12697 -> 14526
strand -
CDS
ATGTATATAAATAACGGTCGAATCAATTATAATAATGAATACGGGTATCGTCGTGGCATATATCGTGAACCATTTTACAGTGATAATGCAGATTATAATACCAATTCAAAATCATATTATGATTATTTAGCTCGATTTAATGGTTTTATTTTTGAATTATGTGATTTTGTCAATGGTTTAGCAGATGATATACAAAAAATGAAAGACACATACGACGCTTTAACGTTATCAAATACAGATGTCACTTATACAGTAGGACAAAAAGGTGATTTTGACACATTGAATCATTGTTTTGATTACATTGAAAATTTAATTGTTCAACCAAAATCTATACGTGTGATATTACTTAAAGATTACATGATGCGAGAACAATTATTCTTACGTGATAAACGTTATAATCATATTACGATTACATCAGAAAATGATATTGTAGAAGCCTATGAAACTGAATTAAATCGTCAAGTTGAAATAAAAACAAATCCAATTTTTAGAGTAAAACCACTATTTTATGGAATTAATTCAACATTCCCTAAAATTGATTTTAAACTTCAAAACAAAGATTTTTCAGATAGTATTAACTGTGGTTTCTTAATGGATAATACAACGTTTGAAATGACTGAACGTGGTGGGTCAACACACTTTAATTTTATTGGTTTATGTGGTGTCAATGGTTCACATATAGGGGCCAACTATTGTGATTTTTCCTATAATGGTAATCGTGAACAATTAGAAGAATATAATAAAGACCAAAATATGTATGGTGACGGATTAAGAATTTTTAATTCATCATTAACAGGTAATTATATGACAGTCAATCGTTGTGGTGAAATTGGAATACACTTCTCACATGGTGCAAGTGGTTATATTGATTTTACCGAAGCAAGATTTAACGGACACCATGGTTTAATGGTGACAACTGGTTCACAAGCGAGTGCAAGAAACTGTAAAATCACTGATACAATTGATGATAATGTTGTAAGTTATGCGTCAAGTGATATTGATTTAAGAAGTAGTGATTGTTCAAATTCACAAACAACATACGGTGTCATTGCGACACGATCATCAAACATTAACTTTGATAAAGGCATTGCTAATGGTTGTGGTGCAAGTGGAATTATGGCAAACAGGGGTTGTTCTATTGACGCCACAGGGGCAACGGCTTCACGTAATAAATGGCATGGTGTCATCGCAAGTAACAACTCAAAAGTTGATTTCACAAGTGGTAACGCGAATGAAAATGGACTTGACGGAATCCAATGTACACATGGTTCAACTGTACAAGCAAGATTATCAACAGCTAATGGAAATAAACGTAATGGTGTACTTGCCTACGCAGGTGATGTGTATTGTCAAGAAATTAATTGTGACGGTAACGGTCGTCGTGGATTAGAAGCTACACGTGGCGGATATGTCGCTGCATATGGTGCGAAAGTATCACGTTCAAAAGATGATAACGTATTGGCATATGGTTCAATGATTTCTATTAATGAAGCAGTGATTGAACGTGCAGGTCGTAACGGTATTGAAGCCACACGTGGTGGTCAAATATTTGCAGATAGAATTACAATCACAGGTAGTGGTGACTTTGGTATTTTAGCTTATGCGTCTAAAGTATTTGCCGAAGCGTCAAATATTTCAGGTACTAAAAATGAACCTGTTTATGCAACACGTGGTGGAGAGGTAACATGCTTTGGTTCAAATATTTCAAGTAACAAAACAGTTTATAACGTGTATAATGGTAGTAGGATATTCACAGATAAAGACCATGGATATTCAACAAACATAGAACCTAATACAATGGATAGTAAAGGGTTCATTATAAAAGGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c8b506239b5a6f8ae66c97b4e818e0a85381ea9994cd9ba9b6a1fe0f6a2b13b2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8639
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of Staphylococcus podophages JBug18, Pike, Pontiff, and Pabna Scopel,S.E., Stanley,S.P., Hernandez,A.C. and Hatoum-Aslan,A. — — GenBank