Protein

View in Explore
Genbank accession
YP_007674302.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGDLMIKRWTTTNDFITYGKTAPANTVVETEGMSSVGDGGALKLYRTGNTGTPSQDFVTRGNNTCTDASGTEWKIIEGTTVTYNGTTDWFNNGFGSTGVGNYVLTDSTWIKATVDTDLTPLESDINTINSSITSIESDVTDINNTLLSKADYADLTKAQEELLSAGSKVYPDDGSVLANGMIVTAGTTHLRVLIGGEPAIVLMSPVASGVVSLLTETSATIGTTPIVFKATTDKGPDNANSFLVSGNQVDDDTVKIQRLFDNSRNITFEDDIATGCRVTAPIKVRSVTSVRGNGNTARIGNEFTDFSTIEKTTNTTVDITNPEQPTQTVDTIMYLDGEWEDGKYPQKLIIEKMALVSKAQDANTHGIYIIQGGNVSFRNVDIFDCAYAIKGYEVWSNVFERVVTNGKIYLQSGTSNTFNQCASGGLSSDGNTSGGFHLSSTYYSTMNACTSDGGISPAYQFSSCNTLTLNSCASEYPLDGGVAGDVGQAIAFTSTGTQAEITNFFLISRPFEEIGSRAAFSFNAPNSNVVFRGGRNALGGFATSDDHVDVYVVGSGNVITFHNYRFFNGDTATPKISWSATAGDSKVIVYDKEGKKYVYYTDGAGNTLVDPIDEIVGDDSQGYVMREDGVLEQWYQVPVASFQTASSTFTTVQGINWYRSAAASFNPYLKPFLNGTLPKVTVEIQSGLAGSRIIIDRVSQAGESATRSGEIQLISVDDFISGGNAYNNLQTVTIRAIGRWA
Physico‐chemical
properties
protein length:741 AA
molecular weight: 79376,77170 Da
isoelectric point:4,53577
aromaticity:0,09312
hydropathy:-0,20378

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007674302.1
1 741
Domain Start End Length (AA) Confidence
N-terminal 1 252 252 0,9820
Central domain 253 589 338 0,9880
C-terminal 590 741 151 0,9701
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-252
Central
253-589
C-terminal
590-741

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage pYD6-A
[NCBI] 		754052 Uroviricota > Caudoviricetes > Schitoviridae > Matsuvirus > Matsuvirus pYD6A
Host Pseudoalteromonas sp. YD6
[NCBI] 		728062 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Pseudoalteromonadaceae > Pseudoalteromonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674302.1 [NCBI]
Genbank nucleotide accession
NC_020849 [NCBI]
CDS location
range 67062 -> 69287
strand -
CDS
ATGGGAGATCTCATGATAAAAAGGTGGACAACAACAAATGACTTTATTACGTACGGTAAAACTGCACCTGCTAATACAGTCGTTGAAACAGAAGGCATGTCTTCTGTAGGAGATGGTGGAGCATTAAAGCTTTATCGTACAGGTAATACTGGCACACCATCACAAGATTTTGTTACACGAGGCAATAACACATGTACTGATGCTTCGGGTACTGAATGGAAAATTATTGAAGGTACTACAGTTACTTATAATGGTACTACAGATTGGTTCAATAATGGATTTGGTTCAACTGGAGTAGGTAACTATGTACTTACAGACTCTACTTGGATAAAAGCTACTGTAGATACTGATTTGACCCCACTTGAATCAGATATTAATACAATTAATTCTAGTATTACTTCTATCGAATCAGACGTAACAGATATTAATAACACGTTACTGAGTAAAGCCGATTATGCAGATCTAACTAAAGCACAAGAAGAGCTGCTATCTGCTGGTTCAAAAGTATACCCAGACGATGGAAGTGTTTTAGCCAACGGCATGATCGTCACAGCAGGAACTACACACCTTCGTGTGTTGATTGGGGGTGAGCCTGCTATCGTTTTAATGTCACCTGTTGCTAGTGGTGTGGTTAGTTTACTAACTGAAACTAGCGCAACAATCGGAACAACGCCGATAGTATTTAAAGCTACCACAGATAAAGGTCCAGACAACGCCAATAGTTTTTTGGTTTCTGGCAATCAGGTTGATGACGACACAGTTAAGATCCAAAGGCTATTTGATAATAGTAGGAATATCACTTTCGAAGATGATATTGCCACAGGATGTCGAGTGACCGCCCCAATAAAGGTAAGGTCAGTAACATCTGTTAGAGGAAACGGCAACACCGCTAGAATTGGAAATGAGTTTACTGACTTTTCGACCATAGAAAAAACCACAAACACTACGGTTGACATTACAAACCCGGAGCAACCAACTCAGACTGTTGATACGATAATGTACTTGGATGGCGAGTGGGAGGATGGAAAGTATCCTCAAAAGCTAATAATTGAGAAAATGGCACTCGTCTCTAAAGCCCAAGACGCAAATACTCACGGGATCTATATTATTCAAGGTGGCAATGTCTCATTTAGAAACGTAGATATTTTTGATTGCGCGTACGCTATAAAAGGGTATGAAGTTTGGTCTAACGTTTTTGAAAGAGTAGTAACAAACGGAAAGATTTATCTGCAATCTGGCACTTCAAACACATTTAATCAGTGCGCGTCAGGTGGGCTAAGCAGCGATGGAAACACTAGTGGAGGGTTTCACCTTAGCTCCACATACTATTCAACAATGAATGCATGTACCAGTGACGGAGGGATCTCCCCGGCTTATCAATTTAGTAGTTGCAACACGCTAACACTGAACAGTTGTGCAAGTGAATATCCACTTGACGGAGGTGTGGCTGGCGATGTTGGACAAGCAATTGCCTTTACTTCAACAGGAACCCAAGCAGAAATAACAAATTTCTTCCTTATTTCGCGACCATTTGAAGAGATAGGAAGTCGAGCAGCATTTAGCTTCAACGCACCAAACTCAAACGTCGTATTTCGAGGAGGTCGCAACGCTCTCGGCGGCTTCGCAACAAGTGATGATCATGTTGACGTCTATGTTGTTGGCTCTGGGAATGTCATAACTTTTCACAATTACAGGTTCTTTAACGGTGATACTGCAACCCCAAAAATATCATGGTCAGCAACAGCAGGCGACTCAAAAGTAATTGTTTACGACAAAGAAGGGAAAAAGTATGTTTACTATACTGATGGAGCTGGAAACACACTAGTTGATCCTATTGATGAAATTGTTGGTGATGACTCTCAGGGGTACGTGATGAGAGAGGATGGTGTTTTGGAGCAATGGTATCAAGTTCCTGTTGCGTCATTTCAGACCGCATCATCAACCTTTACCACAGTACAGGGAATAAACTGGTACAGAAGTGCAGCTGCAAGCTTTAACCCCTACTTGAAACCATTCCTGAATGGGACGCTACCAAAGGTAACAGTTGAAATTCAATCAGGACTTGCGGGGTCTAGAATTATCATCGATAGAGTTAGCCAGGCCGGGGAAAGTGCAACTAGGTCTGGTGAGATTCAGTTAATATCCGTTGATGATTTCATCTCTGGTGGAAATGCTTATAATAACCTTCAAACGGTTACGATAAGAGCAATTGGGCGATGGGCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
0f689878ef72b991bb8b596ffe873ad75ff8d576758c579ffaac8fc98d4715a8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7012
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Pseudoalteromonas phage pYD6-A Henn,M.R., Wolf,A., Jost,G., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank