Protein

View in Explore
Genbank accession
URY13099.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MATLKQIQFKRSKTAGQRPAASVLAEGELAINLKDRVLFTKDDQGNIIDLGFAKGGSIDGNVIHKGNYNQTGDYTLNGTFTQTGNFNLTGIARVTRDIIAAGQIMTEGGELITKSSGTAHVRFFDGNSRERGIIYAPANDGLTTQVLNIRVQDYAAGSESTYAFSGSGLFTSPEVSAWKSISSPQILTDKVITNGKKTGDYDIYSLSNNTPMAEGETAINHLRVMRNAVGAGIFHEVNVNDGITWYSGDGLDTYLWSFNWAGGLKAGHSISIGLPGGSKGYSELGTASIALGDNDTGLKWHQDGYFHTVNNGTRTFIYGPAETQSLRKMVMGYSPDGILMTTPPTENYALATVVTYHDNNAYGDGQTLLGYYQGGNYHHYFRGKGTTNINTHGGLLVTPGNIDVIGGSVNIDGRNNSSTLMFRGNTTGYSSVDNMDIKVWGNTFVDPSGGIRKNIMEISDATSWMSYIQRLTTGEVEMNVNGSFESSGVTAGDRGVHTTGEISSGAVNALRIWNADYGAIFRRSEGSLHIIPTAYGEGKHGDIGPLRPFSMALDTGKVTIPDLQSSYNTFAANGYIKFTGHGAGAGGYDIQYVQAAPIFQEIDDDAVSKYYPIVKQKFLNSKAVWSLGTEINSGTFVLHHIKEDGSQGHTSRFNADGTVNFPDNVLVGGGEAAIARNGNIFSDIWKTFTSAGDITNIRDAIATRIAKEGDTMTGKLTIAAADDALVIRAPNAINSSHIRSEVGGANSWFVGKGGQSDTVSFYNYKTTTGIDLNDAGAITFSPSAFGLVQMSENRMYVNATRWVSQNSGMISLQYNLEAPIFVEHGELNGNVYYPIIKGRSSSTGYGYNTSVELGTLRSGTAGWGTGCIIVRSTENTPEQGHPAAVYQFLANGQFTSPGRIVSGWAGIGVGIEPAWSTPCIAIGDNDTGLVWESDGIYNMYANGQGVFSIRAGLAQTFSNVNFHCNAGMYVRDNIDVNDVYIRSDIRCKSEIKLIDNAQEKSKLLGGYTYLLKNPVTDEVKPSAGLIAQEVQKVFPELVSEDKETGLLRLNYNGIIGLNTATINEHTDEIKELKSEIAELKALIKSLIK
Physico‐chemical
properties
protein length:1088 AA
molecular weight: 117029,96430 Da
isoelectric point:5,59770
aromaticity:0,09283
hydropathy:-0,26562

Domains

Domains [InterPro]
DC_0538
STR
1–688
DC_0538 G3DSA:6.20.80.10 IPR030392 Coil
DC_0339
STR
615–1069
DC_0339
IPR030392
CHP
983–1076
IPR030392
URY13099.1
1 1088
Architecture
STR
STR 1-1076 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URY13099.1
1 1088
Domain Start End Length (AA) Confidence
N-terminal 1 248 248 0,2160
Central domain 249 463 216 0,5397
C-terminal 464 1088 624 0,6766
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-248
Central
249-463
C-terminal
464-1088

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage ESh24
[NCBI] 		2950770 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URY13099.1 [NCBI]
Genbank nucleotide accession
ON528734.1 [NCBI]
CDS location
range 131879 -> 135145
strand -
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACGGCAGGTCAACGTCCAGCTGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGACCGTGTACTTTTTACTAAAGATGACCAGGGAAATATTATTGATTTAGGTTTTGCTAAAGGCGGTAGTATTGACGGGAATGTTATTCATAAAGGCAATTATAACCAAACTGGTGATTATACTTTAAACGGTACATTCACCCAGACTGGTAATTTTAATTTAACTGGTATTGCTCGAGTAACTCGTGATATTATTGCTGCTGGGCAGATTATGACTGAAGGCGGAGAACTTATTACAAAAAGTTCAGGTACAGCGCATGTTCGTTTTTTCGATGGCAATAGTCGCGAACGTGGAATCATTTATGCCCCGGCTAATGATGGTTTAACTACACAAGTACTTAATATCAGGGTTCAAGACTACGCCGCTGGTAGCGAAAGCACTTATGCATTTTCAGGCAGTGGCCTATTTACTTCACCTGAAGTATCAGCATGGAAATCTATTTCGTCTCCACAAATTCTGACCGACAAAGTTATTACAAACGGGAAGAAGACAGGCGATTATGATATCTATTCATTATCAAATAACACTCCAATGGCAGAAGGCGAAACGGCTATTAACCACCTACGTGTTATGCGAAATGCTGTAGGAGCAGGTATTTTCCACGAAGTTAATGTTAATGACGGAATAACCTGGTATTCCGGAGATGGCTTAGACACTTATCTTTGGTCGTTTAACTGGGCCGGTGGATTGAAAGCAGGCCATTCTATTTCTATAGGTCTTCCGGGTGGCTCTAAAGGATATTCTGAATTAGGGACTGCTTCGATTGCTCTTGGTGATAATGATACCGGGCTAAAATGGCACCAGGACGGATATTTTCATACAGTAAACAACGGAACAAGAACTTTCATTTACGGTCCTGCGGAAACACAAAGCCTTAGAAAAATGGTTATGGGTTATTCTCCGGATGGGATTCTTATGACAACGCCACCGACAGAAAACTATGCTCTTGCTACTGTAGTAACATACCACGATAATAACGCATACGGCGACGGTCAAACTCTTTTAGGATATTATCAAGGTGGTAATTATCATCATTATTTCCGCGGTAAGGGTACTACAAACATTAATACTCACGGCGGTTTGTTAGTTACTCCTGGTAATATTGACGTTATTGGCGGTTCTGTTAATATAGATGGTAGAAATAATTCTTCTACACTAATGTTTAGAGGCAACACAACAGGATACAGCTCGGTTGATAATATGGATATTAAAGTTTGGGGTAATACGTTTGTTGATCCAAGCGGAGGTATCCGTAAAAACATTATGGAAATTTCTGATGCAACTAGCTGGATGAGCTATATTCAAAGACTTACTACTGGCGAAGTAGAAATGAACGTTAATGGTTCATTTGAATCATCTGGTGTTACTGCTGGAGATAGAGGAGTTCACACAACAGGTGAAATTTCATCTGGAGCAGTGAATGCGCTTCGTATTTGGAACGCAGATTATGGAGCCATTTTTAGACGTTCAGAAGGTAGTCTTCATATTATTCCAACTGCTTACGGTGAAGGTAAACACGGCGATATCGGTCCACTTCGCCCGTTTAGTATGGCTTTAGATACTGGTAAAGTTACTATTCCAGATTTACAATCAAGTTACAATACGTTCGCAGCAAACGGTTATATTAAATTTACTGGTCACGGCGCGGGCGCTGGTGGTTATGATATTCAATATGTTCAAGCAGCTCCTATTTTCCAGGAAATCGATGATGACGCAGTAAGTAAATATTATCCTATTGTTAAACAGAAGTTTTTAAACAGTAAAGCTGTTTGGTCTTTAGGTACTGAAATTAATTCGGGTACATTTGTTTTACACCATATCAAAGAAGATGGTTCACAAGGCCATACATCAAGATTTAACGCCGATGGTACCGTTAATTTTCCCGATAACGTTCTGGTCGGCGGTGGCGAAGCTGCTATTGCTCGTAATGGTAATATTTTCTCGGATATTTGGAAAACGTTTACTTCAGCAGGAGACATTACAAATATTCGCGATGCAATAGCTACTCGTATTGCCAAAGAAGGCGATACGATGACCGGAAAATTAACTATTGCTGCGGCCGATGATGCTTTAGTAATTAGAGCACCTAATGCAATTAATAGTTCGCATATTCGTTCAGAAGTTGGTGGTGCTAATAGTTGGTTTGTTGGTAAAGGTGGCCAATCTGACACAGTATCTTTTTACAACTATAAAACAACAACCGGTATTGATTTGAATGACGCTGGCGCCATTACATTTAGCCCAAGCGCTTTTGGCTTGGTTCAAATGAGTGAAAACCGTATGTACGTTAATGCTACAAGATGGGTCTCTCAAAACTCAGGTATGATTAGCCTACAATATAACCTTGAAGCTCCTATATTTGTAGAACATGGCGAATTAAACGGGAATGTGTACTATCCTATTATTAAAGGACGAAGTTCTTCAACGGGGTATGGATATAACACAAGTGTAGAGCTAGGTACTTTACGTTCAGGTACCGCAGGTTGGGGTACCGGTTGTATAATTGTTCGTTCAACTGAAAATACACCAGAACAAGGACATCCTGCAGCGGTTTATCAATTTTTGGCCAACGGGCAGTTTACTTCCCCAGGAAGAATTGTTTCCGGTTGGGCGGGTATTGGTGTAGGTATTGAACCCGCTTGGTCTACGCCATGCATAGCAATTGGTGACAATGACACTGGATTGGTCTGGGAAAGCGATGGCATCTACAACATGTATGCTAATGGTCAAGGTGTATTCAGTATTCGAGCTGGGCTGGCCCAGACCTTTAGTAACGTTAACTTCCACTGTAACGCCGGTATGTATGTTCGCGATAACATTGACGTTAACGACGTTTATATTCGTTCTGATATTCGTTGTAAATCGGAAATTAAGCTTATCGATAACGCACAAGAGAAATCTAAACTCTTAGGTGGTTATACTTATCTGCTTAAAAACCCCGTTACTGATGAAGTTAAACCGTCCGCCGGTTTAATCGCCCAGGAAGTTCAAAAAGTATTTCCTGAACTTGTTTCTGAAGATAAAGAGACCGGACTGCTTCGTTTGAACTATAACGGTATTATTGGTTTAAATACTGCCACTATCAACGAGCATACTGACGAAATCAAGGAATTGAAATCTGAAATTGCTGAGTTGAAAGCATTAATTAAATCATTGATAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
27cb4c2fed95841df7b5680c0e3279029af21d792ac3f2e1aa1d9ce211fc9367
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5333
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Design of a bacteriophage cocktail active against Shigella species and testing of its therapeutic potential in Galleria mellonella Filippov,A.A., Su,W., Kevorkian,R.T., Sergueev,K.V., Srijan,A., He,Y., Lurchachaiwong,W., McGann,P.T., Ellison,D.W., Swierczewski,B.E. and Nikolich,M.P. — — GenBank