Protein

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Genbank accession
YP_008320094.1 [GenBank]
Protein name
neck protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSLDNFRNRAIVWDTVNKDFPQPIQIMQGDVNARTLSVKIIDNGGEIDLTGHSLKLTYQYTNSSNSGFVMIPPENLTKGEFLLVIPTEMTKAGVIEANLILLNEDKEQVIVSKNLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTESNTSNIELKANQTDLNNLQTIVNNQGITISTAAQETEVRSLISLLDNVKQTKRVARINLLLEQYKTSGYYRQYTNGEKLVNTDYDLFDMVPVNADTDYFTGISPNAHIAFYDFEQKYISGLVKPQPNFTIPSSYLNTLVVKVPTNAKYMSYACNKNATQSVFYENYNPILDTSQSIFEGLLPFEQIANLPRGLKKVCNQNMFNKKLVVSGRYLDSANGGLPHNANYNVYFMKVKPNTNYTTSGFVNNHDAFYDISGKFISSGNKSGTITTPANAFFWGISLTNTELPGAVICEGNVAKYSDFGTGAIFEVVDTAPQTLNVGADKKFTTIQAAVNFAKDGDTILISSGTYHEAVDAKTKLLHFKGVDKNTVTLEYENGAYSLPPLEISKGSVENMTIHAISQAQVSGEPAKAYCFHADYDIQIGHTLSFTNVKFINDDYQVIGVGLRNNFTLEFNSCDFVTPSGNNAFYVHTDPIRDNSSNQNLIVKDCSIVNNGTGATIHMQSQERVGAVAKVTWQRNIVVNLSGGKLIDMATYNNGLAKDKWLGSSDFVLQPTSAMNNIAQLNFN
Physico‐chemical
properties
protein length:728 AA
molecular weight: 80580,61400 Da
isoelectric point:5,29969
aromaticity:0,09341
hydropathy:-0,27239

Domains

Domains [InterPro]
IPR018913
ATT
10–147
IPR018913 DC_0775
G3DSA:2.60.40.3350
ATT
11–125
G3DSA:2.60.40.3350 IPR011050
IPR018913
ATT
25–147
IPR018913 IPR012334
YP_008320094.1
1 728
Architecture
ATT
STR
ATT 10-147 | STR 148-726 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008320094.1
1 728
Domain Start End Length (AA) Confidence
N-terminal 1 262 262 0,9481
Central domain 263 717 456 0,6227
C-terminal 718 728 10 0,3113
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-262
Central
263-717
C-terminal
718-728

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage jm2
[NCBI] 		1262535 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus cremoris
[NCBI] 		1359 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008320094.1 [NCBI]
Genbank nucleotide accession
NC_021860 [NCBI]
CDS location
range 6853 -> 9039
strand +
CDS
ATGAGTTTAGATAATTTTAGAAATAGAGCGATTGTATGGGATACGGTCAATAAAGACTTCCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAGTTAAAATAATTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATATACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAAGGAGAGTTTCTTTTAGTAATTCCTACCGAAATGACAAAAGCTGGAGTTATTGAAGCGAACTTGATTCTTCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAACATTTATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGCAGTGAGTTGAATGATTTACATGCTCAAACTGAATCAAATACGAGCAATATTGAGCTTAAAGCTAATCAAACGGATTTAAATAACTTACAAACTATTGTTAATAATCAAGGTATTACAATTTCCACAGCTGCTCAAGAAACAGAAGTACGTTCGCTGATTTCGCTTTTAGATAATGTAAAGCAAACGAAGAGAGTAGCACGTATCAATTTATTATTAGAACAATATAAAACAAGTGGATATTATCGTCAATACACAAATGGCGAAAAATTGGTTAATACTGACTATGACCTTTTCGACATGGTACCAGTAAATGCTGATACTGACTACTTTACGGGTATTTCGCCAAATGCACATATTGCATTTTATGACTTTGAACAAAAATATATTTCTGGACTTGTAAAGCCTCAACCTAACTTTACAATACCTTCTTCATATTTAAATACATTAGTTGTAAAGGTTCCGACGAATGCTAAGTACATGTCTTATGCGTGCAATAAAAATGCAACTCAATCAGTTTTTTACGAAAACTATAATCCTATTTTAGACACTTCTCAGTCAATTTTTGAAGGTTTACTACCATTTGAGCAAATCGCAAACCTTCCGCGTGGTCTTAAAAAAGTGTGTAATCAAAATATGTTTAACAAAAAATTAGTTGTATCTGGAAGATACTTAGATTCAGCAAATGGTGGACTACCTCATAATGCTAATTATAATGTTTATTTTATGAAAGTAAAACCAAACACAAATTATACAACAAGTGGATTTGTTAATAACCATGATGCCTTTTATGATATATCAGGTAAATTCATTTCATCTGGAAACAAAAGCGGAACAATTACAACACCAGCGAATGCTTTCTTTTGGGGTATATCATTGACTAATACGGAATTGCCTGGGGCTGTTATCTGCGAGGGTAATGTTGCTAAATATAGTGATTTTGGCACAGGTGCCATATTTGAAGTTGTGGACACCGCCCCTCAAACTTTAAATGTTGGAGCTGATAAAAAATTTACTACCATTCAAGCTGCGGTTAATTTTGCAAAAGACGGTGATACTATCCTGATTTCTTCCGGAACTTATCATGAAGCAGTAGACGCCAAGACTAAGCTATTGCATTTTAAGGGTGTTGATAAAAATACGGTAACCCTAGAATACGAAAACGGAGCATACTCGTTGCCACCTTTGGAAATTTCTAAAGGAAGTGTTGAAAATATGACTATCCATGCAATCAGCCAAGCACAAGTTTCCGGAGAGCCTGCGAAAGCATATTGTTTCCACGCTGACTACGACATTCAAATTGGGCATACCTTGTCTTTTACAAATGTAAAATTCATTAATGATGATTATCAAGTCATTGGCGTTGGATTGAGAAATAACTTTACTCTTGAATTTAATAGTTGTGATTTTGTTACACCGTCCGGAAACAATGCTTTTTATGTACATACTGACCCAATCCGCGACAATTCAAGTAATCAGAATTTGATCGTTAAAGACTGCTCAATCGTTAATAATGGAACTGGTGCGACTATCCACATGCAATCGCAAGAACGTGTCGGGGCAGTTGCTAAGGTAACGTGGCAACGCAATATTGTTGTTAATTTGTCAGGTGGTAAATTAATCGACATGGCAACTTATAACAATGGTTTAGCAAAAGACAAATGGCTCGGCTCGTCTGACTTCGTGCTACAACCAACTTCTGCGATGAATAATATTGCTCAATTAAATTTTAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4735205540b9001d72f646fe9cc981050cf8f5bc70615d8b008a00854a464d49
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6998
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50