Protein

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Genbank accession
QFR42379.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGLVSQSIKNLKGGISQQPNILRFPDQGELQVNGWSSETEGLQKRPPMVFNRKLGPAGFLGAAPLVHLINRDEFEQYYVVFTGGDIKVFDLNGQEYAVRGDKSYVQTGNPRNSIRCVTVADYTFVVNRERVVQADGNLTNGGTFNDQKDALINVRGGQYGRTLNVIFNEAVRATIKLPSGTGTTPPIEEQVAAVDAQNIAEELAKQIRASLAGNPGWNVGVGTGFVHIVAPDGDSIRGLQTKDGYADQLISPVTHYAQTFAKLPQNAPDGYTVKIVGDTSRSADKYYVRYNLTRKVWEETVGWNIQVGLNNGTMPWSLIRAADGQFDFVPNSWVGRTAGDDDTNPHPSFVGQAITDVFFYRNRLGMLSGENIILSRTAKYFNMYPASVAVLSDDDPIDVAVSHNRVSILKYAVPFSEELLLWADEAQFVLNASGVLSAKSVELNLTTEFDVNDGARPYGIGRGVYFASPRATFTSINRYYAVQDVSAVKNAEDMTMHVPSYIPNGVFSISGSSTENFATVLTSGATGKVFIYKFLYIDEQIQQQSWSHWDFGDNVTILAANSIGSHMHVILQNGYDIFMGSISFTKKTLDFGNEPYRLYMDAKTRYDIPANAFNNDRYETTVDLNAVFGGMRWQVGKILVSDEVGEVRQYEPPAGGWASDPTLRIVGDMAGKRVFIGFAYEFRYEFSKFLIKKQDESGGFSTEDVGRLQHRRAWLNYEQSGAFYVDVTNLGRSYRYTMSGKPLGDTTLGQANLESGQFRFPLAGNAQYNRVVLTSDYTTPLSIIGCGWEGNYIRRSTGI
Physico‐chemical
properties
protein length:799 AA
molecular weight: 88411,95220 Da
isoelectric point:5,57559
aromaticity:0,11514
hydropathy:-0,29011

Domains

Domains [InterPro]
IPR058003
TTP
1–799
IPR058003
QFR42379.1
1 799
Architecture
TTP
TTP 1-799
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFR42379.1
1 799
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9930
Central domain 141 339 200 0,1611
C-terminal 340 799 459 0,2021
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-339
C-terminal
340-799

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagP-SK1
[NCBI] 		2653646 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Elunavirus
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFR42379.1 [NCBI]
Genbank nucleotide accession
MN450150 [NCBI]
CDS location
range 23354 -> 25753
strand +
CDS
ATGGGTCTCGTTAGTCAATCAATCAAGAACCTCAAGGGTGGCATCTCGCAGCAACCCAATATCCTGCGCTTCCCGGACCAAGGGGAGTTACAGGTCAACGGGTGGTCCTCCGAAACAGAGGGCCTCCAGAAGCGTCCACCTATGGTGTTCAACCGCAAGCTGGGACCAGCAGGGTTCCTCGGGGCCGCACCTCTCGTGCACCTGATTAACCGCGATGAGTTCGAGCAGTATTACGTGGTGTTCACTGGTGGTGACATCAAGGTGTTCGACCTGAACGGTCAGGAGTACGCTGTGCGCGGTGATAAGAGCTACGTTCAGACGGGCAACCCTCGCAACTCCATCCGTTGTGTGACTGTAGCTGACTACACCTTCGTGGTGAACCGTGAGCGCGTTGTGCAGGCCGATGGGAACCTGACCAATGGTGGCACCTTCAATGACCAGAAGGACGCTCTGATTAACGTCAGGGGCGGTCAGTACGGTCGAACGCTTAACGTCATCTTCAACGAGGCTGTGCGTGCAACCATCAAGTTACCTTCCGGTACTGGCACCACGCCACCTATCGAGGAACAGGTTGCCGCTGTGGATGCACAGAACATCGCTGAGGAACTCGCCAAGCAAATCAGGGCGTCACTGGCGGGTAACCCCGGCTGGAACGTTGGGGTCGGCACAGGGTTCGTGCATATCGTGGCCCCCGATGGTGACTCTATCCGTGGACTTCAGACGAAGGATGGCTATGCTGACCAGTTAATCAGCCCGGTCACTCACTATGCTCAGACGTTCGCTAAGTTGCCACAGAACGCGCCTGATGGTTATACCGTGAAGATTGTGGGCGATACCTCTCGCAGTGCTGATAAGTACTATGTGCGCTACAATCTGACCCGTAAGGTCTGGGAGGAAACCGTAGGGTGGAACATTCAGGTCGGTCTCAACAATGGCACAATGCCGTGGTCCCTTATCCGCGCAGCCGATGGTCAGTTTGACTTCGTGCCTAACTCGTGGGTCGGACGTACAGCAGGTGACGATGACACCAACCCTCATCCGTCCTTTGTGGGCCAAGCTATTACCGATGTGTTCTTCTACAGGAACCGCCTCGGGATGCTCTCGGGTGAGAATATCATTCTGAGCCGCACCGCTAAGTACTTCAACATGTACCCGGCGAGTGTCGCTGTGTTGTCTGATGATGACCCGATTGATGTGGCTGTATCGCACAACCGTGTGTCCATCCTGAAGTACGCTGTGCCGTTCTCTGAGGAACTCTTACTGTGGGCTGATGAAGCACAGTTTGTCCTGAATGCTTCGGGTGTGCTCTCAGCGAAGTCCGTGGAGTTAAACCTCACGACTGAGTTCGATGTGAACGATGGGGCGCGGCCTTATGGTATCGGGCGTGGTGTGTACTTTGCGAGTCCTCGGGCAACCTTCACGTCCATCAACCGTTACTATGCGGTGCAGGATGTGAGCGCTGTGAAGAACGCAGAGGATATGACGATGCACGTACCGAGCTACATTCCGAATGGAGTGTTCAGTATCTCAGGGTCGTCCACAGAGAACTTCGCTACGGTGCTGACCAGTGGTGCCACAGGCAAGGTGTTCATCTACAAGTTCCTCTACATTGATGAGCAGATTCAGCAGCAGTCATGGTCTCATTGGGACTTCGGGGATAACGTTACGATTCTCGCGGCGAACTCCATCGGGTCACACATGCACGTCATCTTGCAGAATGGTTATGACATCTTCATGGGGTCTATCAGCTTCACTAAGAAGACTCTGGACTTCGGGAACGAGCCATACCGCCTGTACATGGACGCGAAGACTCGCTATGACATCCCAGCTAATGCTTTCAACAACGACCGTTACGAGACCACTGTGGACCTCAATGCGGTGTTTGGTGGTATGCGCTGGCAGGTCGGAAAGATTCTGGTGAGTGATGAAGTCGGTGAGGTGCGCCAGTATGAGCCACCAGCAGGAGGCTGGGCGTCAGACCCTACGCTTCGCATCGTTGGCGACATGGCTGGAAAGCGGGTGTTCATCGGGTTCGCCTATGAGTTCCGCTACGAGTTCTCTAAGTTCCTCATTAAGAAACAAGATGAGAGCGGCGGGTTCTCCACTGAGGATGTGGGCCGATTGCAGCACCGCAGGGCGTGGCTCAACTATGAGCAGTCCGGTGCGTTCTACGTTGACGTGACCAACCTCGGGCGGTCCTATCGTTACACCATGAGTGGCAAACCTTTGGGTGACACAACTCTCGGTCAGGCCAATCTGGAGTCAGGACAATTCCGTTTCCCTCTGGCTGGCAACGCTCAGTACAACCGTGTGGTGCTCACGAGTGACTATACGACTCCGCTGTCAATCATTGGTTGCGGCTGGGAAGGTAACTATATTCGCCGTAGCACAGGCATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2aa761215be0522e29edcc25970c197f54b2897b289cfca0056a76b1b336eb33
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3019
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of vB_PagP-SK1, a T7-like phage infecting Pantoea agglomerans McDougall,D.L., Soutar,C.D., Perry,B.J., Brown,C., Alexander,D., Yost,C.K. and Stavrinides,J. 2020 36147614 GenBank