Protein

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Genbank accession
ATW62249.1 [GenBank]
Protein name
pectate lyase superfamily domain protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MPRKDLIQIRRGTSTQWATANPILADAEIGHDTTINKHKVGDGSKRWLELQFTDVDKADRANLPVNVKDYGAVGDGAADDTDALQLAIDTAYDNRTYQVFLPAGTYRTTRPLLAKVRYKAGWWPGEATSLIGEQKASTIIKKDGNGTLSGVSTEVNGVDATIILFTQNAQSGSGGKGTGAKLVELSIENTSTDANSMAVTGVACQRMEVAKLNITGHKGMIFDDAFSNKFDNIVFRVDEDALVIETGTSNRLGSLYAPQALNPYKIHSSYTTMDAVYADDAKGTIFRLGGQGNTATSLGTESRNAQYILSFASSSTWVVSSLYMFRQIGYPAGGYDISDCAVVYANGGCQVRIGNIGVSQQNNIAAGENSYVVAHNPAGVHNSIKISSLKYTKGSSGITLHEPMIYSNSGLGTYAAMKYDGEDGTYSVRGGRLMPFIGGRKNNDTTASSNVSDTTGLENKAIYLDNETPTTDSKGNDNSSQTAYYTGDWLMANKPAEQHAAGWTVTGKTGASVSTNSFAPIPIVLSGTTAERPTTNLYVGLSYFDTDMGANIWWDGVQWVAGTITTIDGGSV
Physico‐chemical
properties
protein length:572 AA
molecular weight: 60990,94720 Da
isoelectric point:5,38171
aromaticity:0,08392
hydropathy:-0,31853

Domains

Domains [InterPro]
DC_0088
STR
4–571
DC_0088
SSF69349
STR
7–94
SSF69349
IPR041352
ATT
7–44
IPR041352 IPR012334
IPR011050
STR
65–414
IPR011050
IPR024535
ENZ
65–197
IPR024535
ATW62249.1
1 572
Architecture
ATT
STR
ATT 4-44 | STR 45-571 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATW62249.1
1 572
Domain Start End Length (AA) Confidence
N-terminal 1 80 80 0,9458
Central domain 81 402 323 0,9854
C-terminal 403 572 169 0,9285
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-80
Central
81-402
C-terminal
403-572

Taxonomy

  Name Taxonomy ID Lineage
Phage TM7 phage DolZOral124_53_65
[NCBI] 		2053587 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATW62249.1 [NCBI]
Genbank nucleotide accession
MG269973 [NCBI]
CDS location
range 33439 -> 35157
strand -
CDS
ATGCCGAGAAAAGACCTCATTCAAATCCGACGAGGTACGTCAACGCAGTGGGCTACTGCAAACCCCATACTAGCTGACGCTGAGATCGGCCATGATACAACGATAAATAAACACAAAGTCGGCGACGGGTCGAAAAGATGGCTCGAGCTTCAATTCACAGATGTTGATAAAGCCGACCGCGCCAACCTACCAGTGAATGTCAAGGATTATGGGGCTGTCGGCGACGGAGCCGCGGACGATACCGACGCACTACAGCTGGCCATTGATACAGCCTACGATAATCGAACATACCAAGTATTCCTCCCTGCCGGCACCTACCGTACCACTCGTCCGCTCCTGGCCAAAGTCCGCTACAAGGCCGGCTGGTGGCCTGGAGAAGCGACTAGCCTCATCGGCGAGCAGAAAGCCAGCACTATCATCAAAAAAGATGGTAACGGAACACTATCGGGTGTATCAACAGAGGTCAACGGCGTTGATGCAACAATCATTCTATTTACCCAGAACGCTCAGAGTGGTAGCGGCGGTAAAGGCACCGGCGCAAAGCTTGTCGAATTGTCCATCGAGAATACCTCTACCGACGCCAACTCCATGGCTGTCACCGGTGTAGCCTGCCAGCGCATGGAGGTCGCCAAGCTTAACATCACTGGCCACAAGGGCATGATTTTCGACGACGCTTTTTCCAACAAATTCGACAATATCGTATTCCGCGTAGACGAGGATGCACTCGTCATCGAGACCGGTACATCGAACCGTCTCGGCTCCCTCTATGCGCCGCAGGCCCTGAACCCGTACAAGATACACAGCTCCTACACTACTATGGACGCAGTCTATGCGGACGATGCAAAGGGTACGATTTTCAGGCTGGGTGGGCAAGGCAATACGGCTACATCTCTGGGCACTGAGAGCCGAAACGCGCAGTACATACTGTCGTTCGCGTCTAGTTCGACATGGGTAGTGAGCTCACTATATATGTTCCGACAAATCGGATACCCGGCCGGCGGATATGATATCAGTGATTGTGCTGTCGTCTACGCGAACGGTGGCTGTCAGGTTCGCATCGGTAACATCGGAGTCTCACAGCAAAACAATATCGCCGCGGGCGAGAATAGCTACGTTGTAGCCCACAACCCCGCGGGCGTCCATAATTCAATCAAAATCTCATCACTCAAATACACAAAAGGCTCCTCAGGTATCACCCTCCACGAGCCAATGATCTACTCGAATAGCGGTCTCGGTACCTACGCGGCTATGAAGTATGACGGCGAGGATGGTACATACAGCGTCCGGGGTGGCCGCCTCATGCCATTCATCGGCGGTCGCAAGAATAACGACACCACCGCCAGCTCGAACGTCTCAGATACCACCGGGCTCGAAAACAAAGCTATCTATCTAGACAATGAAACGCCCACCACAGACAGCAAAGGCAACGACAATTCGTCGCAGACCGCCTACTACACCGGCGACTGGCTTATGGCAAATAAACCGGCCGAACAGCATGCAGCTGGCTGGACAGTCACAGGCAAAACCGGCGCATCCGTATCGACCAACTCATTCGCGCCAATCCCTATCGTGCTCAGTGGCACCACCGCAGAGCGGCCAACCACCAATCTGTACGTCGGGCTATCTTATTTCGACACTGATATGGGAGCGAATATCTGGTGGGATGGAGTACAATGGGTAGCAGGAACAATAACAACGATTGACGGAGGATCAGTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
747b888056837f9d424e71d706d97682f6a0543185a6610f77a734ba14f80a6e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6913
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel microbial diversity and functional potential in the marine mammal oral microbiome Dudek,N.K., Sun,C.L., Burstein,D., Kantor,R.S., Aliaga Goltsman,D.S., Bik,E.M., Thomas,B.C., Banfield,J.F. and Relman,D.A. — — GenBank