Protein

View in Explore
Genbank accession
WLW38853.1 [GenBank]
Protein name
minor structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDSYLNGRKVDVLNPLDLIGVGRHKLEIQVDKKNYWNMFKEQIIIPTPPNNGVNNLFRGGEVLPSEVYNDNWYKTFTWFAFGGQSTVEHKSDLYPQMNYFKFANATGTVDMPANQFEKEVELKPNTRYTWQFNARKIKGDMITSFGSSSSILVDNTKDVTIDGETGLRLGTDLYYNWSNKAVTDGWELHYISFTTASTFPTSKVFRFIMNAGCEWHVKNIQITEGEGPKPFQLSEADRYKYTQYQMDKGHREIYPNFGFYYSEEFDFCCAYKVNIHSGFETVDFNPVEQSYTIRCEVENFAQILNPVKEYYIKVPSNCTFDNSILMNPTTERGGNYLLECKAKGLHLQVFEQPDGDYSRSQNRKVHSNMYDNLNAQRWNVFGGYVYTGELQTYQLEN
Physico‐chemical
properties
protein length:397 AA
molecular weight: 46081,98100 Da
isoelectric point:5,49147
aromaticity:0,14861
hydropathy:-0,62544

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WLW38853.1
1 397
Domain Start End Length (AA) Confidence
N-terminal 1 23 23 0,9258
Central domain 24 222 200 0,0318
C-terminal 223 397 174 0,8860
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-23
Central
24-222
C-terminal
223-397

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage STA173
[NCBI] 		3065252 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WLW38853.1 [NCBI]
Genbank nucleotide accession
OQ985166 [NCBI]
CDS location
range 20388 -> 21581
strand +
CDS
ATGGATAGTTATTTAAACGGAAGAAAAGTAGATGTATTAAACCCTTTAGATTTAATCGGAGTAGGTCGCCATAAGTTAGAAATACAAGTAGACAAGAAAAATTATTGGAACATGTTCAAGGAACAAATAATTATTCCAACACCGCCAAATAACGGTGTAAATAACTTGTTTAGAGGTGGAGAGGTTTTACCTAGTGAGGTGTATAACGATAACTGGTATAAAACTTTTACTTGGTTTGCTTTTGGTGGTCAAAGTACTGTAGAACATAAAAGTGATTTATATCCTCAAATGAATTATTTTAAGTTCGCAAATGCCACAGGAACGGTTGATATGCCCGCAAATCAGTTTGAAAAAGAAGTAGAACTAAAACCAAACACACGCTATACATGGCAATTTAACGCTAGAAAAATAAAAGGCGATATGATTACTTCTTTTGGTTCTAGTAGTAGTATTTTAGTTGATAACACTAAAGATGTAACAATTGACGGAGAAACAGGCTTAAGACTTGGTACAGACTTATATTATAATTGGAGTAATAAAGCAGTCACAGACGGTTGGGAATTGCATTATATTTCTTTTACTACTGCTTCAACGTTTCCAACATCTAAAGTATTTCGCTTTATAATGAATGCAGGTTGTGAATGGCATGTAAAAAATATCCAAATCACAGAGGGGGAAGGACCTAAACCATTCCAACTTTCAGAAGCAGACAGATACAAGTATACTCAATACCAAATGGACAAAGGACACAGAGAAATTTATCCAAACTTTGGGTTCTATTATAGTGAAGAATTTGACTTCTGTTGTGCTTATAAAGTCAATATCCATTCAGGTTTTGAAACTGTTGATTTTAACCCTGTTGAACAGAGTTATACAATTAGATGTGAGGTTGAAAACTTTGCTCAAATATTAAACCCAGTTAAAGAGTATTATATCAAAGTACCAAGCAATTGCACTTTTGATAATAGCATACTAATGAACCCTACAACAGAAAGAGGAGGTAATTACTTACTAGAATGTAAAGCTAAAGGACTACACTTACAAGTGTTTGAACAACCTGACGGAGATTATAGCAGAAGTCAGAACAGAAAAGTTCACTCTAATATGTACGATAATCTAAACGCTCAAAGGTGGAACGTTTTTGGTGGTTATGTATATACTGGGGAACTACAAACATATCAATTAGAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c96f76f951aca10a30521d06dea4f85fc8d2ee21efb33d3dd9dbbc3ed50aac2a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4933
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and sequencing of ten Lactococcus lactis, c2-related bacteriophages from dairy industry plants in Russia Pechenov,P., Stanovov,D., Efimov,A., Belalov,I., Kulikov,E. and Letarov,A. 2023-11-28 — GenBank