Protein

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Genbank accession
YP_007677270.1 [GenBank]
Protein name
tail sheath
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAASQLSPGVIIQERDFTTVSSVALANIGALAAPFERGPVEQVVDINNERNLISTFGKPNDTNYEFWFTAAQFLSYGGTLKTIRADGTNLKNAVSNSAAVKIKNLQNYETAYEGGSNNWVFATQSPGGYGNSLRVFVTDAGADQILTLNAPAGTDDYRFVRAGAVVSGNKGGKVFRYSVKLTLESTVNGDFIPDEPAWSTAAYYSKFDRVTNGGNIYQAQGAGTSGASAPTHTSGLANDGGVDWAFIGADAGTTIEIGGADQTVTVLSWNPTDRVLEIDIPSGGITGKIDDTMTVVQGSVTGPIASVVRELHVVLDADSAAFAATDSIADADSEAAVIGTVRDEYPEREYLPGKKWVNVAPRPSTSLYCLDKGGKNDEMHIIVLDGDGQLTGTPNTLLEKFISVSKASDAKSTVGENNYYANVLKQTSQYIYQGGHIDDDDQFPVNAVLATGAWGAISANRNFNRIQSSKSVHDEPNGRHMVGGKSGGSIKFAFAGGVDDYSNTSSDFSNAYNLVSDAESINVDYILGGPAGATKDAALAKANSILNIVNSRKDCIAFFSPMRSDVIGQTNSDTITNKILTYFQSIGSTSYAVLDSGYKYIYDKYSDVYRYIPCNGDVAGLCLQTGINQDPWFSPAGFSRGVLRNAIKLAYSPNKDQRDKLYSERINPIVTFPGQGVILFGDKTALGYQSAFDRINVRRLFLTLERVIGESAKAQLFEQNDETSRSLFRNLVEPYLRDVQGRRGVTDFLVKCDEENNPPDAVDRGEFYAEIYVKPTRTINYITLTFTATRTGVSFSEIAS
Physico‐chemical
properties
protein length:800 AA
molecular weight: 86211,60190 Da
isoelectric point:4,90858
aromaticity:0,09750
hydropathy:-0,26288

Domains

Domains [InterPro]
G3DSA:3.40.50.11780
STR
26–124
G3DSA:3.40.50.11780 DC_1098 G3DSA:3.40.50.11780 IPR020287
cd12215
STR
196–220
cd12215 G3DSA:3.40.50.11780
IPR035089
TAS
547–685
IPR035089
IPR052042
Unmapped
587–792
IPR052042
YP_007677270.1
1 800
Architecture
STR
STR
TAS
TAS
STR 26-464 | STR 485-653 | TAS 654-685 | TAS 690-789 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007677270.1
1 800
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,8345
Central domain 144 364 222 0,6062
C-terminal 365 800 435 0,2201
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-364
C-terminal
365-800

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM4
[NCBI] 		536466 Uroviricota > Caudoviricetes > Pantevenvirales > Greenvirus > Greenvirus ssm4
Host Synechococcus sp. WH 8018
[NCBI] 		166322 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007677270.1 [NCBI]
Genbank nucleotide accession
NC_020875 [NCBI]
CDS location
range 86126 -> 88528
strand +
CDS
ATGGCAGCGTCACAGTTATCGCCAGGTGTTATTATTCAGGAGAGAGACTTTACCACAGTTAGTTCAGTAGCACTGGCTAATATTGGTGCGCTCGCTGCTCCCTTTGAAAGAGGACCTGTAGAACAGGTTGTTGACATCAACAATGAGAGAAATCTCATCTCTACCTTTGGCAAACCGAATGATACTAATTACGAATTTTGGTTTACAGCCGCTCAATTTTTGAGCTATGGCGGTACTCTCAAAACTATCCGTGCTGATGGCACGAACTTAAAAAATGCAGTCAGTAATTCTGCTGCAGTAAAGATTAAAAATCTACAGAACTACGAAACCGCGTATGAGGGTGGTAGTAACAACTGGGTATTTGCAACACAATCACCTGGTGGTTATGGAAACTCTCTTAGAGTCTTTGTCACAGACGCTGGTGCCGATCAAATTTTAACTTTGAACGCTCCCGCAGGTACTGATGACTATAGATTCGTTAGAGCAGGTGCAGTTGTCTCTGGTAACAAAGGCGGTAAAGTATTCCGCTATTCAGTAAAGTTGACACTTGAGTCAACTGTAAATGGGGACTTTATCCCAGACGAACCCGCATGGTCTACTGCTGCTTACTACAGTAAGTTTGACAGAGTAACCAACGGTGGTAACATCTACCAAGCACAAGGTGCTGGTACATCTGGTGCTTCTGCACCTACTCACACATCTGGCCTTGCCAATGATGGTGGAGTGGACTGGGCATTTATTGGTGCTGACGCAGGTACAACGATTGAAATCGGTGGCGCTGATCAGACAGTTACTGTTCTCTCCTGGAACCCTACTGATCGCGTACTAGAGATTGATATCCCTTCTGGTGGTATTACTGGTAAAATTGACGACACTATGACAGTCGTCCAAGGATCTGTAACAGGTCCAATTGCAAGTGTTGTAAGAGAACTTCACGTCGTTCTTGACGCTGACTCTGCTGCATTCGCTGCAACAGATAGCATCGCTGATGCTGATTCTGAAGCTGCAGTGATTGGTACAGTCCGCGACGAGTATCCTGAGCGTGAGTATCTTCCTGGTAAGAAGTGGGTGAATGTCGCTCCACGTCCTTCTACTTCACTTTATTGTCTTGATAAAGGTGGTAAGAATGATGAAATGCATATCATCGTTCTTGATGGAGATGGTCAGTTAACTGGCACTCCAAACACTCTTCTTGAGAAGTTTATCTCTGTATCTAAGGCTAGCGATGCTAAGTCTACTGTTGGAGAAAACAACTACTATGCAAACGTTCTGAAGCAGACATCTCAGTACATCTACCAAGGTGGTCATATTGATGATGACGATCAGTTCCCTGTAAACGCAGTTCTTGCAACTGGTGCTTGGGGTGCTATTTCCGCTAACAGAAACTTCAATAGAATTCAGTCTTCCAAGTCTGTGCATGATGAGCCTAACGGTCGTCACATGGTGGGTGGTAAGTCTGGTGGTTCTATTAAATTTGCTTTCGCTGGTGGTGTTGATGACTATTCTAACACTTCCTCAGATTTCAGCAACGCTTACAACCTTGTATCTGATGCTGAGTCAATCAATGTAGACTACATTCTCGGTGGACCTGCTGGTGCTACTAAGGATGCTGCTCTTGCAAAAGCAAACTCAATCCTCAATATCGTAAATTCTAGAAAGGACTGCATCGCGTTCTTCTCTCCAATGCGTTCCGACGTTATTGGTCAGACTAACTCTGATACAATCACTAACAAGATTCTTACTTATTTCCAATCAATCGGTTCAACTTCTTACGCTGTTCTTGATTCTGGTTACAAGTATATCTACGATAAGTATTCTGACGTTTATCGCTACATCCCTTGCAATGGTGATGTTGCTGGTCTTTGCTTGCAAACTGGTATTAACCAAGATCCTTGGTTCTCTCCTGCAGGTTTCTCTCGCGGTGTTTTGAGAAATGCAATTAAACTTGCTTACTCTCCTAACAAAGATCAAAGAGACAAACTGTATTCCGAGCGAATTAACCCCATTGTTACTTTCCCTGGCCAAGGCGTAATCCTCTTCGGTGACAAAACCGCACTGGGTTATCAATCTGCCTTTGATCGTATCAACGTACGTCGTTTGTTCTTGACTCTTGAAAGAGTTATCGGAGAGTCTGCTAAGGCACAACTCTTTGAACAGAATGATGAGACATCTCGTTCACTCTTCCGTAACTTGGTTGAGCCATACTTGAGAGATGTTCAAGGTCGTCGTGGTGTAACGGACTTCCTCGTCAAGTGTGACGAAGAAAACAACCCACCAGATGCTGTTGATAGAGGCGAATTCTACGCTGAAATCTATGTGAAGCCAACACGCACGATTAACTACATTACATTGACATTCACTGCAACGAGAACTGGTGTCTCGTTCTCTGAAATTGCCAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4d3bb58c9413b99ce6edba19493706d80ca453e784227b9d2c58025c09b2abca
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7157
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM4 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank