Protein

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Genbank accession
YP_011898245.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MAYTPTTWNNDDVITAEKLNKLEQGVKNEQVGPAGPAGAKGDKGDPGEAGPKGDKGDPGAQGPAGPSYTLPAANKTTLGGVKQMALIADLSTETTADLKNKINAILAEMKKQGIMANS
Physico‐chemical
properties
protein length:118 AA
molecular weight: 12034,39320 Da
isoelectric point:5,37045
aromaticity:0,02542
hydropathy:-0,61695

Domains

Domains [InterPro]
DC_1506
STR
1–65
DC_1506 G3DSA:6.10.140.1630
IPR022741
RBD
64–116
IPR022741
G3DSA:6.10.140.1630
RBD
67–118
G3DSA:6.10.140.1630
YP_011898245.1
1 118
Architecture
STR
RBD
STR 1-65 | RBD 66-118
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Ruminococcus phage phiRM10
[NCBI] 		2772516 Uroviricota > Caudoviricetes > Munstervirinae > Aceathervirus RM10 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011898245.1 [NCBI]
Genbank nucleotide accession
NC_104261.1 [NCBI]
CDS location
range 5247 -> 5603
strand +
CDS
ATGGCATATACACCAACTACATGGAATAATGATGACGTTATTACAGCAGAGAAACTGAATAAGTTAGAGCAGGGCGTGAAGAACGAGCAGGTTGGACCAGCGGGACCAGCAGGAGCAAAAGGCGATAAAGGAGATCCTGGAGAAGCAGGACCGAAAGGAGACAAGGGAGATCCAGGTGCACAGGGACCTGCGGGACCAAGCTACACTCTTCCAGCGGCGAACAAAACAACGCTGGGCGGTGTGAAACAGATGGCTTTGATCGCAGATTTGTCTACAGAAACAACAGCTGACCTGAAAAATAAAATCAATGCAATTCTTGCAGAGATGAAAAAGCAGGGGATTATGGCGAATTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4c06f8f9d904f8210028a1858099ff1c604304269cdc50d20e6ece051dad816b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8189
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Temperate bacteriophages infecting mucin-degrading bacterium Ruminococcus gnavus from the human gut Khokhlova,E.V., Shkoporov,A.N., Draper,L.A., Kingston,A.R., Forde,A., Ross,R.P. and Hill,C. 2023-03-30 — GenBank