Protein

View in Explore
Genbank accession
YP_009804563.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAIKTKIIVQQILNIDDTTTTASKYPKYTVVLGNSISSITAGELTAAVEAAAGSAAAAKGSEIAAKDSENKAKDSEIQAGIHAGASEASATQSAASAAESERQAGLSKDSADDSAASALESKGFRDATELAAQNAEQSRLLAEQAKNAAQAAQTGAETAQAGAETAEANAAASAATAGEHAAAARVSETNAKTSETNAAASEAEAGNQASNATTEADRAKAEADRAAQIVDIKLDKEDISGFIKVYKTKAEADADVGNRVLGEKILVWNQTDSKYGWYKVAGTAEAPVLELVETEQKLVSVNNVHADDDGNVQITLPGGNPSLWLGEVTWFPYDKDSGVGYPGVLPADGREVLRVDYPDTWEAIEAGLIPSVSEAEWQAGATLYFSTGDGSTTFRLPDMMQGQAFRAAAKGEENAGNIKEQIPYITSVNGVLPEDATGAIVLGLSSVEGTLSIAKGGTGATTKEAARTALEVPAASDVYTKAETYEKSELYTQTEIDDKLADVYTKAETYEKSELYTQTEVDDKLVEVKTQADTSYLAKTQNLSDLADRAAAWLNVRPIGSTPLAGDPVNDYDAVTKRWVENKINTGTIGPTMNGVMNYGVGDFHLRDSRAYIQPYEVVSDGQLLNRADWPELWAYAQMLSPISDSEWLADPSRRGKYSLGDGLTTFRVPDRNGVQEGSIKGLFGRGDYGVPSDDGKVFDASLPNISSSVSSDLNGRVWFPFAATTGAMDIATSGDMTFKPAAGYEMGSQGNILRFNASKSSAVYGRYGNTDNVLPRSFVGVWVIRASGGFVAANTSWSVINGDATRPSAGTIVDGGEILSKYNVGTATEAQMSWRMRAEIGATYYARLNVSNTTTGKTAVYDFNENGDFTLPGRLTAKGNATIAGSATIIDGQYPQLSMRPNYLGGGTVPDTVVGGAMFFEGALDPKGKKYYRLFFRRKDGNRTGEVALDFPTSTSGTLALQGTSGLEYKKDITDADAQEAMDRINGQRLVNFVYKDDEQGRVRFGIIAEEAELIAPQYIKHNQVSYEDILDEEGNKIGEKTKDRPSVDVNPIVMDLMGCVQTLTKRIEDMKAEIAELKASK
Physico‐chemical
properties
protein length:1083 AA
molecular weight: 115236,07590 Da
isoelectric point:4,67162
aromaticity:0,07295
hydropathy:-0,38569

Domains

Domains [InterPro]
DC_0608
ATT
1–464
DC_0608 DC_1514 DC_1985
Coil
Unmapped
209–229
Coil IPR030392
IPR030392
CHP
969–1019
IPR030392 Coil
YP_009804563.1
1 1083
Architecture
ATT
STR
RBD
ATT 1-464 | STR 496-691 | RBD 693-1083
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SP-3
[NCBI] 		1186124 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009804563.1 [NCBI]
Genbank nucleotide accession
NC_048001.1 [NCBI]
CDS location
range 80173 -> 83424
strand -
CDS
ATGGCAATTAAAACTAAAATTATTGTACAGCAGATTCTGAACATAGATGACACTACAACTACTGCTAGTAAGTATCCTAAATATACAGTAGTTTTAGGTAATTCTATTAGTTCTATTACTGCTGGTGAATTAACTGCTGCTGTAGAGGCCGCTGCAGGATCTGCTGCTGCTGCTAAAGGTTCTGAAATAGCAGCTAAAGACTCTGAAAATAAAGCTAAAGATTCAGAGATTCAGGCAGGTATTCATGCTGGTGCTTCCGAGGCTTCAGCAACCCAGTCTGCCGCTTCTGCTGCTGAATCTGAAAGACAAGCTGGTTTATCTAAGGATAGTGCTGACGATTCCGCTGCATCTGCTCTAGAGTCTAAAGGCTTTAGAGATGCCACTGAATTAGCTGCTCAAAATGCTGAACAAAGTCGTTTACTGGCTGAACAAGCTAAGAATGCTGCACAAGCTGCACAAACTGGAGCTGAAACTGCCCAAGCTGGTGCTGAAACTGCTGAGGCTAATGCTGCTGCTTCTGCTGCTACTGCGGGGGAACATGCGGCTGCTGCCAGAGTTTCAGAAACCAATGCTAAGACTTCTGAAACTAATGCTGCTGCTTCTGAAGCGGAAGCAGGTAATCAGGCTAGCAATGCTACTACTGAGGCAGATCGTGCAAAAGCCGAAGCAGATCGTGCAGCTCAGATTGTAGATATCAAGCTGGATAAAGAAGATATATCCGGTTTCATCAAGGTTTATAAGACAAAAGCAGAAGCTGATGCTGATGTCGGAAACCGTGTATTAGGTGAGAAGATCCTAGTATGGAACCAAACTGATTCAAAATATGGTTGGTATAAGGTTGCAGGAACTGCTGAAGCTCCAGTGCTAGAACTGGTAGAAACTGAACAGAAACTTGTATCTGTTAATAACGTTCATGCAGATGATGATGGTAACGTACAGATCACTCTTCCGGGAGGTAACCCTTCTTTATGGTTAGGTGAAGTTACTTGGTTCCCTTACGATAAAGATTCGGGTGTTGGATACCCTGGTGTTCTGCCAGCTGATGGTCGTGAAGTACTTCGTGTTGACTATCCTGATACTTGGGAAGCCATCGAAGCTGGTTTAATTCCTTCTGTTTCAGAAGCTGAATGGCAGGCCGGTGCAACTCTCTACTTCTCCACTGGTGATGGTTCCACAACCTTCCGTTTACCAGATATGATGCAGGGCCAAGCATTCCGTGCTGCTGCAAAAGGTGAAGAGAATGCCGGTAATATTAAGGAGCAGATTCCATATATTACCTCAGTTAACGGAGTTTTGCCGGAGGACGCTACTGGTGCTATAGTTCTTGGACTCTCTTCGGTTGAAGGTACCCTTTCTATTGCCAAGGGCGGTACAGGGGCGACTACTAAAGAGGCTGCTAGAACAGCCCTAGAGGTACCTGCTGCTTCAGATGTATATACTAAAGCAGAGACTTATGAAAAATCTGAACTATATACTCAAACTGAGATAGATGATAAACTAGCAGATGTATATACTAAAGCAGAGACTTATGAAAAATCTGAACTATATACTCAAACTGAGGTAGATGATAAACTAGTAGAGGTAAAAACTCAGGCAGATACTAGCTATCTTGCTAAAACTCAGAATTTATCCGATCTTGCAGATCGTGCAGCTGCATGGTTAAATGTACGCCCTATTGGGTCTACGCCGCTGGCAGGCGACCCTGTTAATGATTATGATGCTGTAACTAAGCGTTGGGTGGAGAACAAGATTAACACTGGCACAATTGGACCAACGATGAATGGTGTAATGAACTACGGTGTCGGTGATTTCCACCTGCGTGATAGCCGCGCATACATTCAGCCGTATGAGGTAGTGTCAGATGGGCAATTATTAAATCGTGCCGACTGGCCTGAACTATGGGCATACGCTCAAATGCTATCTCCTATTAGCGATTCTGAGTGGCTTGCAGACCCATCACGGAGAGGTAAGTATTCACTTGGTGATGGTTTAACTACATTTCGCGTCCCCGACCGTAATGGCGTGCAAGAAGGGTCTATCAAAGGATTGTTTGGTCGCGGTGATTACGGTGTTCCATCCGATGACGGAAAAGTGTTTGATGCATCGTTGCCTAACATTTCATCTTCAGTATCTTCTGACTTGAACGGGCGTGTTTGGTTTCCATTCGCTGCTACTACTGGTGCTATGGATATTGCAACATCGGGGGATATGACATTTAAGCCAGCAGCTGGCTATGAAATGGGCTCGCAAGGTAACATCCTTCGTTTTAACGCTTCAAAGTCTTCCGCTGTTTACGGTAGATACGGAAATACTGATAACGTATTGCCCCGCAGCTTTGTTGGTGTATGGGTCATCCGCGCATCTGGCGGCTTTGTAGCGGCAAATACGTCGTGGAGCGTGATCAATGGTGATGCCACGAGGCCATCCGCAGGAACGATAGTTGATGGCGGTGAAATTCTATCCAAGTATAACGTAGGGACAGCTACAGAAGCACAGATGAGTTGGCGTATGCGCGCGGAAATTGGTGCTACCTACTACGCTAGACTTAATGTGTCTAACACCACCACAGGGAAGACTGCCGTATACGACTTCAACGAGAATGGTGACTTCACCCTCCCCGGTCGGCTTACGGCTAAAGGCAACGCGACTATAGCTGGTAGTGCCACAATCATTGATGGACAATACCCTCAATTGTCAATGAGACCTAACTACCTTGGCGGAGGTACAGTCCCTGATACGGTAGTCGGCGGCGCGATGTTCTTTGAGGGTGCTTTAGACCCTAAGGGAAAAAAGTATTACCGCCTATTCTTTCGAAGGAAAGATGGCAATAGAACTGGAGAAGTCGCCCTAGATTTCCCAACCTCCACTTCAGGCACGCTTGCGTTGCAGGGAACATCCGGCCTTGAGTATAAAAAGGATATTACTGATGCCGATGCCCAGGAGGCTATGGACAGAATTAACGGACAGCGCCTTGTAAACTTCGTCTACAAAGACGATGAACAGGGGCGTGTACGCTTTGGCATCATCGCTGAGGAAGCTGAGTTAATCGCACCGCAGTATATCAAGCACAATCAGGTATCTTACGAGGACATTCTTGATGAAGAAGGGAATAAGATTGGCGAGAAGACGAAGGACAGACCTTCCGTTGACGTCAACCCAATCGTCATGGACTTGATGGGGTGTGTTCAGACGCTGACTAAAAGGATCGAGGATATGAAAGCAGAGATTGCCGAACTAAAGGCTAGTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fa952c659fdf65281142bea99d9832d0b8ad99a149d66285e6f6f1a826d67b8e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5783
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SP3 genome Sritha,K.S., Sarita,G.B. and Jeena,A. 2019-12 — GenBank