Protein

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Genbank accession
YP_009811527.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRTGNIELMLSAQIKNFRPEVLSADPVVGDLVQAQTARMWYNSTEGKYKYFDGTAIKELGGGGSVEGAILADGTVPMTADLLLSGPDQSASGDNAAVSKKHVETVVATKQDKLTGLTENGVVVAGADNELQTSNVTAAELGYLSGASSNIQSQITAVSNKANANETALAGKLNAANGQLTGDLDANGNTVSNLAAPANANDAARKIDIDNAIAGIDWLQDSDAIQQDGTLDPELVAGKQYLILAADQINPNFGSITGLVDNMIVRYNGTAFVIVFDPTDSEAGGAVTWIKSIKEYRRFDGTVWTTFGGASEFNAGDGLEKSGNVVNVKVGAGIQITSNAVTAKLDSAGGLEDNAGSTRVKLDGATLARSVDGLAIADGGVGYDQIAAAALGDGLKQDTTNSKIAVDVAAVKTAGGFIDANGGDVDHINLTGTGALTDASAVSKKYVDDAIAGSAGGAAAKLYQYDKTAGGDAAATAHTFTHNAGVKYGTVTVVDDTGYQIIPDEVVFIDANSLRVELATAKKVAIAFVTGTNAYVEPAA
Physico‐chemical
properties
protein length:539 AA
molecular weight: 55052,27620 Da
isoelectric point:4,43773
aromaticity:0,05566
hydropathy:-0,05213

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811527.1
1 539
Domain Start End Length (AA) Confidence
N-terminal 1 414 414 0,9028
Central domain 415 528 115 0,0669
C-terminal 529 539 10 0,9955
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-414
Central
415-528
C-terminal
529-539

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_AD1
[NCBI] 		2283029 Uroviricota > Caudoviricetes > Alexandravirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811527.1 [NCBI]
Genbank nucleotide accession
NC_048054 [NCBI]
CDS location
range 60241 -> 61860
strand -
CDS
ATGCGTACTGGTAATATTGAACTGATGCTCAGTGCTCAGATTAAGAACTTCCGTCCAGAGGTTCTTTCCGCTGATCCAGTTGTAGGTGATCTGGTCCAGGCTCAAACTGCACGTATGTGGTACAACAGCACCGAAGGTAAGTACAAATACTTCGACGGTACTGCAATCAAAGAGCTGGGCGGTGGCGGTTCTGTAGAGGGCGCTATCCTGGCTGACGGTACTGTGCCGATGACTGCGGACCTGCTGCTGTCTGGTCCAGACCAGTCTGCATCTGGCGACAACGCGGCTGTTTCTAAGAAACACGTTGAAACCGTTGTTGCTACCAAGCAGGACAAGCTGACCGGCCTGACTGAAAACGGTGTAGTAGTTGCTGGTGCAGATAACGAACTGCAAACCTCAAACGTAACCGCTGCCGAGCTAGGCTATCTGTCTGGCGCAAGCTCTAACATCCAGTCTCAGATCACCGCTGTTAGCAACAAAGCTAACGCGAACGAAACTGCTCTGGCTGGTAAGCTGAACGCCGCTAACGGCCAACTGACTGGCGACCTCGACGCGAACGGTAACACCGTTTCTAACCTGGCTGCTCCAGCTAACGCGAACGATGCTGCTCGTAAGATCGATATCGACAACGCTATCGCGGGTATCGACTGGCTGCAAGACTCTGACGCTATTCAGCAGGACGGCACTCTCGACCCAGAACTGGTAGCTGGTAAACAGTACCTGATTCTGGCTGCTGACCAGATCAACCCGAACTTCGGTTCTATCACTGGTCTGGTAGACAACATGATCGTTCGCTATAACGGCACTGCGTTCGTTATCGTGTTCGACCCAACTGACAGCGAAGCTGGTGGTGCTGTTACCTGGATTAAGTCCATCAAAGAGTATCGTCGTTTCGACGGCACTGTGTGGACCACGTTCGGCGGTGCTTCTGAGTTCAACGCAGGCGACGGTCTGGAGAAATCTGGCAACGTTGTTAACGTGAAAGTTGGTGCTGGTATTCAGATCACCTCTAACGCTGTAACTGCGAAGCTGGACTCTGCTGGCGGCCTGGAAGATAACGCTGGCAGCACTCGCGTTAAACTGGACGGCGCTACTCTGGCACGTTCTGTTGATGGTCTGGCAATTGCTGATGGTGGCGTTGGTTACGACCAGATTGCTGCCGCTGCACTTGGTGATGGCCTGAAACAGGACACCACTAACAGCAAAATCGCTGTTGACGTTGCTGCGGTTAAAACTGCCGGTGGCTTCATCGACGCAAACGGCGGTGACGTTGACCACATCAACCTGACTGGTACTGGCGCTCTGACCGATGCTTCTGCTGTCAGCAAGAAGTACGTTGACGACGCTATCGCAGGTTCTGCTGGTGGCGCTGCTGCTAAACTGTACCAGTACGACAAAACTGCTGGCGGTGATGCTGCCGCAACTGCCCACACCTTCACTCACAACGCTGGTGTGAAGTATGGTACTGTCACAGTTGTTGACGACACTGGCTATCAGATCATCCCTGATGAAGTTGTGTTCATCGACGCAAACAGTCTGCGTGTTGAGCTGGCTACTGCGAAGAAAGTCGCAATCGCATTCGTAACTGGTACTAACGCCTACGTTGAACCAGCTGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1d1fc9f0b232b7a192b3799ab0b2e3a4048e55d73db65282627c3a26ed51c1a1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7280
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank