Protein

View in Explore
Genbank accession
WMC01368.1 [GenBank]
Protein name
pectate lyase superfamily protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAHYCTVIANFLTMQERGGAPVPVSGRVEFTPTAHAFSGDAVFTQAARTGYVVGGVLYDSPDATTAGVRLVAPSPGVSPERFGYKVTAHLRDGEGRPAPYPCGFINPTAGEVLNLAEQAPVPDPGSPSGWSARGPRGEVGPPGVQGERGLPGPQGEPGPPGPPGAPGQPGQPGQPGRDGGAFDDSKILRRLEALETAPKQAAPTQSGYSVSVIDAPYGADPTGKADATAAIQAAIDAVYAAGGGAVRIPAGKYVVSYPFIKLKGFVQVIGDGDGTQILASDGTPITEKTGVFHTGTWNERALDPDLIHFGVSSVWIRAHRTGRNHQPAIANLCGVLLNTDLGDSPAEPDAAPTMNNVKVWDMETGAAILGRDDQAMDVWNLKIRNTLQAGLVVGKPDGHPELVAKVAGGNGGADNQFFGLNVGGANQSQGGYAGVEVYTSQCTFVHSRVWFTHRAASWQQIYALPVASADGTDITAGAPQGENRAAQKDGSGWFIKGTKCIFTGCLAQENGGHGFLVYWGQNQLTNCRAESSSYRDTVHGSAREGDAADFYIANGGADGTIITGCISQKVGGRGTGARWAFYVETWFRGLTITGCAAKDVAGPAGSETGPVRWRSPQGDNVYIQVDTVFFTTRKAGAGLQGPKGDPGPKGADGVGVPQKLSIAGSELTLSPDGGTVTLPSTDLSSLVSRADALARRVEALEARPQGGGGGGAVMKPRKRYGLTWEARDTTNVNGNGNNALLRHFLEFDPNTGLGIVHLDFTIQAGKIPRGSLFSIPDTGPVASSLVEMQSVTPGGGGIWIEKGSRQVQTDGISTPGRYILNIVGFFEEK
Physico‐chemical
properties
protein length:829 AA
molecular weight: 86100,04950 Da
isoelectric point:5,92503
aromaticity:0,07600
hydropathy:-0,26671

Domains

Domains [InterPro]
DC_1109
ATT
1–241
DC_1109 Coil
IPR008160
STR
132–179
IPR008160 IPR011050
IPR012334
STR
209–628
IPR012334
IPR012334
STR
210–628
IPR012334
IPR024535
ENZ
217–283
IPR024535
WMC01368.1
1 829
Architecture
ATT
STR
ATT 1-241 | STR 242-628 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WMC01368.1
1 829
Domain Start End Length (AA) Confidence
N-terminal 1 223 223 0,9914
Central domain 224 649 427 0,9525
C-terminal 650 829 179 0,6877
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-223
Central
224-649
C-terminal
650-829

Taxonomy

  Name Taxonomy ID Lineage
Phage Caudovirus D_HF5_3
[NCBI] 		3071197 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMC01368.1 [NCBI]
Genbank nucleotide accession
OR148987 [NCBI]
CDS location
range 18052 -> 20541
strand +
CDS
ATGGCTCATTATTGTACAGTTATAGCTAATTTTTTGACGATGCAGGAGCGGGGGGGTGCCCCGGTTCCTGTGTCTGGGCGTGTTGAGTTCACGCCTACCGCGCACGCTTTTAGTGGTGACGCGGTGTTTACGCAGGCTGCTCGCACCGGGTACGTGGTGGGCGGTGTTTTGTATGATTCGCCTGACGCAACCACCGCTGGTGTTCGGCTTGTTGCCCCGTCTCCTGGTGTGTCGCCGGAGCGTTTCGGGTACAAGGTTACTGCGCATTTGCGTGATGGTGAGGGCCGCCCGGCCCCGTACCCTTGCGGGTTTATTAACCCTACCGCTGGGGAGGTGCTGAATCTTGCTGAGCAGGCTCCGGTACCTGATCCGGGTTCGCCGTCTGGGTGGTCTGCGCGTGGGCCGCGTGGTGAGGTGGGGCCGCCGGGTGTGCAGGGTGAGCGTGGCTTGCCTGGGCCGCAGGGAGAACCGGGGCCTCCCGGCCCGCCTGGTGCGCCGGGGCAGCCGGGGCAGCCGGGGCAGCCGGGCCGTGATGGGGGGGCGTTTGATGATTCAAAGATTCTGCGCCGCCTTGAGGCTCTTGAGACCGCGCCGAAGCAGGCGGCACCCACTCAATCGGGTTACAGTGTGAGCGTGATTGACGCCCCCTATGGTGCAGACCCTACGGGTAAGGCTGATGCTACTGCGGCGATCCAGGCGGCTATTGATGCTGTGTATGCTGCTGGTGGGGGGGCTGTACGCATCCCAGCCGGTAAATATGTCGTCAGCTACCCGTTCATCAAGCTCAAGGGGTTTGTGCAGGTTATCGGCGATGGTGACGGCACCCAAATCCTAGCATCAGACGGCACGCCTATCACGGAGAAGACAGGGGTTTTCCATACCGGTACGTGGAATGAGCGTGCCTTAGACCCCGACCTGATTCATTTCGGTGTGTCTAGCGTGTGGATTCGCGCCCACCGGACGGGCCGTAACCACCAGCCCGCCATCGCAAACCTGTGCGGCGTGCTACTAAACACTGATCTTGGGGATTCCCCTGCTGAGCCGGACGCCGCACCGACCATGAATAATGTGAAGGTCTGGGATATGGAGACGGGCGCGGCGATCCTTGGCCGCGACGACCAGGCAATGGACGTGTGGAACCTCAAGATACGCAACACGCTGCAGGCCGGGCTTGTTGTGGGTAAACCTGATGGGCACCCCGAGCTGGTGGCGAAGGTTGCGGGCGGGAACGGCGGCGCCGATAACCAGTTCTTCGGGCTGAATGTCGGCGGTGCGAATCAGTCACAGGGTGGTTACGCCGGTGTTGAGGTGTATACGTCTCAGTGCACTTTCGTTCATTCCCGTGTGTGGTTTACGCACCGCGCCGCTTCGTGGCAGCAGATATACGCCCTGCCTGTGGCTTCGGCTGATGGCACTGATATTACTGCTGGCGCGCCGCAGGGTGAGAACCGGGCCGCGCAGAAAGACGGCTCGGGATGGTTCATCAAGGGAACTAAATGTATCTTCACGGGCTGTTTGGCGCAGGAGAACGGTGGGCACGGGTTCCTTGTTTATTGGGGGCAGAATCAGCTCACGAATTGCCGCGCCGAATCTTCCTCTTACCGTGACACGGTTCACGGGTCTGCTCGTGAGGGTGACGCCGCCGATTTCTATATTGCGAACGGCGGGGCCGATGGCACTATTATCACCGGCTGCATTTCGCAGAAGGTTGGGGGGCGCGGCACCGGCGCCCGCTGGGCTTTCTATGTTGAAACCTGGTTTAGGGGCCTCACGATCACCGGGTGTGCAGCTAAGGATGTTGCAGGCCCGGCCGGGTCTGAGACTGGGCCGGTGCGGTGGCGATCCCCGCAGGGCGATAACGTCTATATCCAGGTGGATACGGTGTTTTTCACTACCCGTAAGGCTGGCGCTGGGTTGCAGGGGCCGAAAGGCGACCCTGGGCCGAAGGGCGCGGACGGGGTAGGGGTGCCGCAGAAGCTTTCTATCGCCGGGAGTGAGCTTACGCTCTCACCTGATGGGGGTACGGTAACCTTGCCTTCTACTGATTTATCTTCTCTTGTTTCTAGGGCTGATGCGCTTGCCCGCCGGGTAGAGGCCCTGGAAGCACGCCCGCAAGGCGGCGGCGGTGGCGGGGCTGTGATGAAGCCTCGTAAGCGGTACGGTCTGACGTGGGAGGCAAGGGACACGACAAACGTGAACGGCAATGGCAATAATGCACTATTGCGTCATTTCCTAGAGTTTGACCCAAATACGGGGCTAGGGATAGTGCATTTGGATTTCACAATACAGGCCGGGAAAATTCCGAGAGGATCCCTGTTCTCCATCCCTGACACGGGGCCGGTGGCATCATCTCTGGTTGAGATGCAGTCAGTAACACCAGGCGGCGGCGGCATTTGGATAGAAAAAGGTAGCCGTCAGGTACAGACTGACGGGATAAGCACCCCAGGGCGCTACATCCTGAACATTGTCGGATTTTTTGAGGAGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f194e999ab6be2ef523cb00df9fa9f9082154d75a7560d4cb02b4498f6e05b24
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7161
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of diverse anelloviruses, cressdnaviruses, and phages in the human oral virome in North Carolina Paietta,E.N., Kraberger,S., Custer,J.M., Vargas,K.L., Epsy,C., Ehmke,E., Yoder,A.D. and Varsani,A. 2023-08-26 — GenBank