Protein

View in Explore
Genbank accession
XZO20879.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTKVDGSLKALLQGVSQQPPRDRLSGQCTEMINMTADPVAGLSRRAPTDLVGALGASSDVRGFHNFEMRDGGKYLAYFRDGGVRVTDYNAVEFPVTVEPAAAPYLNIAGDLACTTVEDQVIVANKSVITAMTGERRQFYNMPRGVRGKATLIHVRGGAYGREYRIFHHGNEVAMYRPPNGTSAVMVNATRTDHIAHRLFEALTQGGGEVGEIDGAGSGSRKSGFFGNANWGVARFADVILITRTNDAHDDYRITVTDDNGNVNMKVIQDYAGSTEDLPYIAPHGYLVRIATETDPEDDLLLEFIVDGLEPGTNIGSSFGLPGYWQETVAADVSIAFNRATMPHILEYNPDNRSFVFRQGNWANRRVGTGRSNPDPSFLGNTINDVGTFQGRLVFLAGSFVCMGRTNRFDDFWMGSISQLVDTDPIDISSTAVEASVMRAVVPNNRDLVVFSQKGQFLVFGRQVVTPQNAALVLTTTFEAELQAKPTASGPYVFFATNYGRFTGMREFYSEGTTDANDARLITQHVKEYIMGRATRMISSSNYDMLMVQTDRNRRDVYVYQYIWSSNEKVQSAWSKWTLPFEAVFKWTLPFEAVFSYFDEEMVYFVCRQTTGAGVEHFLYRMSLDIYAEEQVSYPIFLDERFDVADVYTAFVLPFNRLADAPLVAIQADGCPNPGLAVPIQSVTFDAANNRYIATLRYDMQGGDIVVGRTFYSEYRPTMPMIKDQDNVVIGTGRFIIKQFLLTLSNTGHIIGKLLSKYGDGVEVEFQGRLIGSPDNVIGSAATVDETFEMPFRESPMRADVKFFTERWLPMTILDIEWLGQYSKSGKRISTGG
Physico‐chemical
properties
protein length:832 AA
molecular weight: 92474,16700 Da
isoelectric point:5,20807
aromaticity:0,11178
hydropathy:-0,20337

Domains

Domains [InterPro]
IPR058003
TTP
1–828
IPR058003
XZO20879.1
1 832
Architecture
TTP
TTP 1-828 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XZO20879.1
1 832
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,9914
Central domain 138 344 208 0,2882
C-terminal 345 832 487 0,2265
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-344
C-terminal
345-832

Taxonomy

  Name Taxonomy ID Lineage
Phage Agrobacterium phage PAT1
[NCBI] 		3388777 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XZO20879.1 [NCBI]
Genbank nucleotide accession
PQ082932 [NCBI]
CDS location
range 23120 -> 25618
strand +
CDS
ATGACAAAAGTAGACGGAAGTCTGAAAGCGCTCCTACAGGGCGTGAGCCAACAGCCACCTCGCGACCGTCTGTCGGGTCAATGTACTGAGATGATCAACATGACCGCAGACCCTGTGGCTGGATTGAGCCGCCGTGCACCTACCGATCTGGTGGGTGCGCTCGGTGCATCATCTGATGTACGCGGCTTTCACAATTTTGAAATGCGTGACGGTGGTAAGTATCTTGCGTACTTCCGTGACGGTGGTGTGCGTGTTACGGACTACAACGCTGTGGAGTTCCCGGTTACGGTTGAACCGGCGGCTGCACCGTACCTGAACATTGCCGGTGATCTTGCCTGCACTACGGTAGAGGATCAGGTTATCGTTGCTAACAAGTCAGTGATTACAGCTATGACGGGCGAGCGTAGGCAATTCTACAACATGCCACGTGGTGTGCGTGGTAAGGCTACGTTGATCCATGTACGTGGTGGTGCGTATGGTCGTGAGTACCGTATCTTCCATCACGGTAACGAGGTGGCCATGTACCGTCCTCCGAATGGTACGAGTGCTGTCATGGTTAATGCCACACGTACCGACCACATCGCACATAGACTGTTCGAGGCTCTGACGCAGGGCGGTGGCGAGGTTGGTGAGATTGATGGTGCCGGTTCGGGCAGTCGTAAGTCAGGGTTCTTTGGAAACGCCAATTGGGGAGTTGCTCGGTTCGCTGACGTGATCCTGATCACCCGCACAAACGACGCCCATGACGACTACAGGATCACCGTAACGGACGACAACGGTAACGTCAACATGAAGGTGATACAGGATTACGCGGGTAGTACCGAAGACCTCCCATACATCGCCCCGCACGGGTACTTGGTCCGCATTGCTACCGAGACAGACCCGGAAGACGACCTACTGCTAGAGTTTATTGTAGATGGTTTGGAGCCGGGTACGAACATCGGGTCGAGCTTCGGTCTACCCGGCTACTGGCAAGAGACAGTGGCTGCGGATGTATCGATAGCATTCAACCGCGCAACGATGCCGCATATCCTAGAGTACAATCCCGACAACCGGTCCTTTGTGTTCCGACAGGGTAATTGGGCCAACCGGCGTGTTGGTACAGGACGGTCTAACCCGGACCCCTCATTCTTGGGTAACACCATCAATGACGTAGGGACGTTCCAAGGGCGACTTGTGTTTCTAGCAGGGTCGTTTGTGTGCATGGGCAGGACCAATAGGTTCGACGACTTCTGGATGGGTTCCATCAGTCAGCTTGTGGACACAGACCCAATCGACATCAGTTCTACGGCGGTCGAGGCATCGGTGATGCGGGCAGTGGTCCCGAACAACCGTGACTTGGTGGTGTTCAGTCAGAAGGGCCAGTTCCTTGTGTTCGGTAGGCAGGTGGTGACACCACAGAATGCTGCACTGGTCTTGACTACCACATTCGAGGCGGAGCTACAGGCCAAACCAACTGCATCAGGACCGTACGTGTTCTTTGCTACGAACTATGGACGCTTCACAGGTATGCGTGAGTTCTACAGTGAAGGTACTACGGATGCTAACGATGCACGCCTGATCACTCAGCACGTCAAGGAGTACATTATGGGCAGGGCTACGCGGATGATCTCATCGTCCAACTACGACATGCTCATGGTGCAGACTGATCGCAATAGGCGGGACGTATACGTGTACCAGTATATCTGGTCTAGCAATGAGAAGGTCCAATCCGCATGGAGCAAATGGACGTTGCCTTTTGAAGCAGTATTCAAATGGACGTTGCCTTTTGAAGCAGTATTCAGTTACTTCGATGAGGAAATGGTGTACTTCGTGTGCAGGCAGACCACAGGCGCAGGTGTTGAGCACTTTCTGTATCGTATGTCGTTGGACATTTATGCAGAGGAACAGGTGTCTTACCCGATCTTCTTGGATGAGCGCTTCGACGTGGCCGATGTGTACACGGCATTCGTGCTACCGTTCAACCGGTTGGCCGATGCGCCGCTGGTGGCTATTCAGGCAGACGGGTGCCCTAACCCCGGCCTAGCTGTACCGATCCAGAGCGTGACATTCGATGCCGCGAACAACCGGTATATCGCTACGTTGCGGTACGACATGCAGGGCGGGGATATCGTTGTAGGGCGCACGTTCTATAGCGAGTACCGTCCTACTATGCCGATGATCAAGGATCAGGACAATGTCGTGATTGGTACGGGACGGTTCATAATCAAACAGTTCCTACTTACCCTGAGCAACACAGGCCACATCATCGGCAAGCTCCTGAGCAAGTACGGTGACGGTGTTGAAGTGGAGTTCCAAGGTAGGTTAATCGGTTCGCCCGACAACGTTATTGGTTCGGCTGCGACGGTTGATGAAACCTTCGAAATGCCGTTCAGGGAAAGCCCCATGCGGGCAGACGTAAAGTTCTTCACTGAGCGCTGGCTACCTATGACTATCCTCGACATCGAGTGGTTGGGGCAGTACAGTAAGTCAGGGAAGCGTATCTCAACAGGAGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f1010d42b4679d75f1cd54efbef29e299d2380ae4708dfd553e14e6c6cef2f96
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8667
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization and Genomic Analysis of a Novel Lytic Bacteriophage PAT1 Infecting Agrobacterium tumefaciens Sabri,M., El Handi,K., Cara,O. and Elbeaino,T. 2024 — GenBank