Protein

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Genbank accession
YP_009101389.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANSYNAYVANGTQTAFLVTFEQRVFTQIQVYLNSELQTSGYTYNSVTKQIIFDTAPLAGVIVRLQRYTSEVLLNKFGQDAAFTGSNLDENFEQILFKAEETQEAWLAPLDRALRVPNSEVSINALPNVAGRRNKALGFDNNGQPFMVPLVDIPDSALAIALAMNDGGKWIGTLGGGTFLDRQDTVCLSEFTNNTGYASVAAACQACFDYAKANNKVVDARGWEGTVNSTITMDGIEVVGGTWNGTADIRLLNATFRNFSASKVRVCYWGGNVRIADYEFTDHPSASKVASILFQGNIAGGSYVIENGVHRNGYFGILQQGTGEAIDNGVIRNIALMDMSGDGIEMNVINKHYDGGLSIENIYLENINGINPTSNPSFVSNWGIGIGLAGQGPFGWDAAETQYAKNITVRGVHAPRGVRQVIHFEVSKNCSVYDVHANPDLTVSNGTGLTAAGVITYGCKDIVIDGVYGEPIVGSTGTDPAAVRLVMCEWGSNQAGAGGVPGASNPSFNMTLRNIYTKTGRIYAGIGSDDVNTNVYHLENIHCYRLSLFGVATILNMTNVTGVDFDCVGDDSSGGTSSNGVYPRRKTVLNMVNVNFYGPGNTEGALYSKARYSDISTLNSNVRAIPYTNIQGDVGVILSPVNRMYTLPNDLATLTGGEFPTGKEFCEGTVLFKTDGTGGNFIVTRFGAYIPDDGNNFKVRAAAAGQTYLEQNLTPAGTQASTSWLYHKPISAGTRLNIPGAGPSGGTLTVTVMRAPYQVDNNIGNPVRIDISPAIVTAIPAGTQLAATYPVAFI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 84788,98940 Da
isoelectric point:5,11940
aromaticity:0,09320
hydropathy:-0,07834

Domains

Domains [InterPro]
DC_0126
ATT
1–144
DC_0126 DC_0354 IPR023882 DC_0045
IPR023882
RBD
304–467
IPR023882
YP_009101389.1
1 794
Architecture
ATT
ATT
RBD
RBD
ATT 1-144 | ATT 169-227 | RBD 300-470 | RBD 488-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009101389.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 197 197 0,9913
Central domain 198 696 500 0,9732
C-terminal 697 794 97 0,9730
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-197
Central
198-696
C-terminal
697-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage J8-65
[NCBI] 		1536597 Uroviricota > Caudoviricetes > Autographivirales > Stentvirinae > Bonnellvirus
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009101389.1 [NCBI]
Genbank nucleotide accession
NC_025445 [NCBI]
CDS location
range 33948 -> 36332
strand +
CDS
ATGGCCAATAGCTACAACGCATACGTGGCAAACGGAACGCAGACCGCGTTCCTTGTCACCTTCGAACAACGAGTGTTCACGCAGATTCAGGTGTACCTTAACTCCGAACTCCAGACGAGTGGGTACACCTACAACTCCGTGACCAAGCAAATCATATTTGATACCGCCCCGCTCGCCGGGGTGATTGTCCGACTACAACGGTACACCTCAGAAGTGCTGCTGAACAAGTTCGGTCAGGATGCTGCCTTCACTGGTAGCAACCTCGACGAGAACTTTGAGCAGATTCTCTTCAAGGCAGAAGAGACGCAGGAAGCATGGCTGGCTCCGCTTGACCGTGCCCTGCGCGTACCGAACTCTGAGGTGTCAATCAACGCACTGCCTAACGTCGCAGGCCGCCGCAACAAGGCGCTGGGCTTCGACAACAACGGCCAACCCTTCATGGTGCCGCTGGTTGATATACCCGACTCTGCGCTGGCTATCGCGCTGGCGATGAATGACGGCGGTAAGTGGATTGGTACTCTCGGCGGTGGCACATTCCTCGACCGTCAGGATACTGTCTGCCTGTCTGAGTTCACCAACAACACTGGTTACGCCTCTGTCGCCGCTGCGTGCCAAGCCTGCTTCGACTACGCCAAAGCCAACAACAAGGTTGTGGACGCTCGCGGTTGGGAAGGTACTGTGAACTCAACCATCACTATGGATGGTATCGAGGTTGTCGGCGGTACGTGGAACGGCACAGCGGATATCCGTCTGCTGAATGCTACGTTCCGCAACTTCTCTGCATCAAAGGTTCGTGTCTGCTACTGGGGCGGTAATGTACGCATTGCTGATTACGAGTTCACTGACCACCCATCGGCATCGAAAGTTGCCAGCATCCTGTTCCAAGGCAACATCGCCGGGGGCAGCTACGTCATTGAGAACGGCGTACACCGCAACGGTTACTTCGGTATTCTCCAGCAGGGTACTGGTGAGGCCATTGATAACGGTGTGATTCGCAACATCGCTCTGATGGATATGTCCGGCGACGGCATTGAGATGAACGTAATCAACAAGCACTATGACGGTGGCCTGTCGATTGAGAACATCTACCTCGAAAATATCAACGGTATCAACCCAACCTCCAACCCATCCTTCGTCTCCAACTGGGGTATCGGGATTGGTCTGGCTGGTCAAGGGCCGTTTGGCTGGGATGCTGCTGAGACCCAGTACGCGAAGAACATCACAGTCCGTGGTGTCCATGCTCCGCGTGGCGTGCGTCAGGTCATCCACTTCGAGGTGTCCAAGAACTGCTCGGTGTACGACGTACACGCTAACCCTGACCTTACTGTCTCCAACGGTACAGGTCTGACGGCTGCTGGCGTTATTACCTACGGCTGCAAGGATATCGTCATTGACGGCGTGTACGGTGAGCCTATCGTGGGCAGCACAGGTACTGACCCGGCTGCTGTGCGTCTCGTGATGTGCGAGTGGGGTTCCAACCAAGCAGGTGCTGGTGGCGTGCCGGGTGCATCGAACCCATCGTTCAACATGACCCTGCGTAACATCTACACCAAGACTGGCCGTATCTACGCTGGTATTGGTTCCGATGATGTGAACACCAACGTGTACCACCTTGAGAACATCCACTGCTACCGTCTGAGCCTCTTCGGTGTGGCCACCATCCTGAACATGACCAACGTGACGGGTGTTGACTTCGACTGCGTAGGCGATGACTCCAGCGGCGGTACGTCCTCCAACGGTGTGTACCCGCGACGCAAGACCGTCCTCAATATGGTGAACGTGAACTTCTATGGCCCCGGCAACACCGAGGGTGCCCTGTACAGTAAAGCTCGCTACTCGGATATCAGTACGCTGAACTCCAACGTGCGTGCTATTCCGTACACCAACATCCAAGGTGACGTCGGCGTTATCCTGTCTCCGGTCAACCGTATGTACACACTGCCGAACGACCTCGCAACTCTGACTGGTGGGGAGTTCCCGACTGGTAAAGAGTTCTGCGAGGGTACGGTACTGTTCAAGACGGACGGTACAGGTGGTAACTTCATCGTGACCCGGTTCGGTGCCTACATCCCGGACGACGGCAACAACTTCAAGGTGCGTGCTGCTGCCGCTGGCCAGACGTATCTGGAGCAGAACCTGACTCCGGCTGGTACTCAAGCCTCGACCTCGTGGCTGTATCATAAGCCTATCTCTGCTGGTACTCGCCTGAACATTCCGGGCGCAGGGCCAAGCGGCGGTACGCTTACGGTCACTGTGATGCGAGCGCCGTATCAGGTAGACAACAACATCGGGAACCCGGTGCGCATTGATATCAGCCCGGCAATCGTAACTGCGATTCCGGCAGGTACTCAGCTCGCCGCCACGTACCCGGTCGCATTCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9633007c6fc1c81346d2c0c104a423cce1e4723b4b53c48c037873cc095c90d7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7227
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Synergy as a Rationale for Phage Therapy using Phage Cocktails Schmerer,M., Molineux,I.J. and Bull,J.J. — — GenBank