Protein

View in Explore
Genbank accession
YP_007673153.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,50
Protein sequence
MALTQVKSDGIVDGAVTTNKLSDSGVTAGTYGSSSAIPAITVDAKGRVTSASTSSIDSTAITNGTSNVSVAASGNITATRAGTQRLAVTSSGIDVTGTVQASGNLNPDTTNTYDLGTSSKQWRNVYADTLYGDGSNITGIDAQPNGGGSDNIFFETGQTITTSYTIPSNTNAATIGNLSINSGVVVTVSSGSVWIALG
Physico‐chemical
properties
protein length:198 AA
molecular weight: 19728,16290 Da
isoelectric point:4,30745
aromaticity:0,04545
hydropathy:-0,05051

Domains

Domains [InterPro]
DC_1043
STR
2–197
DC_1043
IPR044914
RBD
54–138
IPR044914
YP_007673153.1
1 198
Architecture
STR
STR 2-197 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIP2
[NCBI] 		754040 Uroviricota > Caudoviricetes > Autographivirales > Sednavirus SRIP2 >
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673153.1 [NCBI]
Genbank nucleotide accession
NC_020838 [NCBI]
CDS location
range 2577 -> 3173
strand -
CDS
ATGGCACTAACACAAGTAAAATCTGACGGCATCGTTGATGGTGCCGTCACCACAAATAAGCTATCTGATTCAGGTGTAACCGCCGGAACCTATGGCAGCTCGTCTGCTATTCCGGCGATCACTGTTGATGCCAAGGGCAGGGTTACTTCTGCCTCAACCAGCTCCATCGACAGCACTGCTATTACCAACGGCACGTCCAACGTGTCGGTGGCAGCTAGCGGGAACATTACGGCTACTCGTGCTGGCACTCAGCGGCTGGCTGTTACCTCCTCCGGCATCGACGTAACCGGCACGGTTCAAGCAAGCGGAAACCTTAATCCTGATACAACCAACACCTACGATTTAGGCACTTCAAGTAAGCAGTGGCGCAACGTCTACGCTGACACCCTGTACGGCGACGGTTCAAACATAACGGGTATTGATGCCCAACCTAATGGTGGGGGTTCTGACAACATCTTCTTTGAGACGGGTCAAACTATCACTACCAGTTATACCATTCCTAGCAATACTAACGCTGCTACAATTGGTAATTTAAGTATAAACAGTGGCGTTGTTGTTACTGTTTCTTCCGGCTCTGTCTGGATTGCGTTGGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2e391e024fadfaa910705f4a8571df32c816d1abadddee22addb27cf821ccad3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7484
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIP2 isolate N1_2007 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2021-02-24 — GenBank